Node: freesurfer ================ Hierarchy : _bbreg0 Exec ID : _bbreg0 Original Inputs --------------- * args : * contrast_type : t2 * environ : {'SUBJECTS_DIR': '/data/pt_nmc002/TDMGB_FMRI_ReconAll/'} * epi_mask : True * ignore_exception : False * init : header * init_reg_file : * intermediate_file : * out_fsl_file : True * out_reg_file : * reg_frame : * reg_middle_frame : * registered_file : True * source_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/RealignUnwarp/mapflow/_RealignUnwarp0/meanusub-01_task-spespk_run-01_bold.nii * spm_nifti : * subject_id : sub-01 * subjects_dir : /data/pt_nmc002/TDMGB_FMRI_ReconAll/ * terminal_output : stream Execution Inputs ---------------- * args : * contrast_type : t2 * environ : {'SUBJECTS_DIR': '/data/pt_nmc002/TDMGB_FMRI_ReconAll/'} * epi_mask : True * ignore_exception : False * init : header * init_reg_file : * intermediate_file : * out_fsl_file : True * out_reg_file : * reg_frame : * reg_middle_frame : * registered_file : True * source_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii * spm_nifti : * subject_id : sub-01 * subjects_dir : /data/pt_nmc002/TDMGB_FMRI_ReconAll/ * terminal_output : stream Execution Outputs ----------------- * min_cost_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.mincost * out_fsl_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat * out_reg_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat * registered_file : /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii Runtime info ------------ * command : bbregister --t2 --epi-mask --init-header --fslmat /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --s sub-01 * duration : 122.13282 * hostname : marillion.cbs.mpg.de * runtime_memory_gb : 0.0 * runtime_threads : 1 Terminal output ~~~~~~~~~~~~~~~ stdout 2017-07-11T15:02:51.035518: stdout 2017-07-11T15:02:51.035518: stdout 2017-07-11T15:02:51.035518: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:02:51.035518: 0.00000 0.00000 1.00000 -128.00000; stdout 2017-07-11T15:02:51.035518: 0.00000 0.00000 1.10000 -15.40001; stdout 2017-07-11T15:02:51.035518: 0.00000 -1.00000 0.00000 128.00000; stdout 2017-07-11T15:02:51.035518: 0.00000 -1.10000 0.00000 66.00001; stdout 2017-07-11T15:02:51.035518:$Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ stdout 2017-07-11T15:02:51.035518:$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ stdout 2017-07-11T15:02:51.035518:$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ stdout 2017-07-11T15:02:51.035518:-1.00000 0.00000 0.00000 128.00000; stdout 2017-07-11T15:02:51.035518:-1.10000 0.00000 0.00000 65.99999; stdout 2017-07-11T15:02:51.035518:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/bin/bbregister --t2 --epi-mask --init-header --fslmat /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --s sub-01 stdout 2017-07-11T15:02:51.035518:Diagnostic Level -1 stdout 2017-07-11T15:02:51.035518:FREESURFER_HOME /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64 stdout 2017-07-11T15:02:51.035518:INFO: loading movable /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii stdout 2017-07-11T15:02:51.035518:INFO: loading target /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/orig.mgz stdout 2017-07-11T15:02:51.035518:INFO: no target volume specified, assuming FreeSurfer orig volume. stdout 2017-07-11T15:02:51.035518:Linux marillion 4.4.0-79-generic #100-Ubuntu SMP Wed May 17 19:58:14 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux stdout 2017-07-11T15:02:51.035518:LoadVol 0 stdout 2017-07-11T15:02:51.035518:Log file is /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.log stdout 2017-07-11T15:02:51.035518:TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 stdout 2017-07-11T15:02:51.035518:Tmov: -------------------- stdout 2017-07-11T15:02:51.035518:Ttarg: -------------------- stdout 2017-07-11T15:02:51.035518:Tue Jul 11 15:02:50 CEST 2017 stdout 2017-07-11T15:02:51.035518:ZeroCRAS 0 stdout 2017-07-11T15:02:51.035518:cd /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0 stdout 2017-07-11T15:02:51.035518:i_ras = (-0.999475, -0.0196308, 0.0257888) stdout 2017-07-11T15:02:51.035518:j_ras = (0.0224196, -0.993373, 0.112727) stdout 2017-07-11T15:02:51.035518:k_ras = (0.023405, 0.113245, 0.993291) stdout 2017-07-11T15:02:51.035518:movable volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii stdout 2017-07-11T15:02:51.035518:mri_convert /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii stdout 2017-07-11T15:02:51.035518:mri_convert.bin /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii stdout 2017-07-11T15:02:51.035518:reading from /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii... stdout 2017-07-11T15:02:51.035518:reg file /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.init.dat stdout 2017-07-11T15:02:51.035518:setenv SUBJECTS_DIR /data/pt_nmc002/TDMGB_FMRI_ReconAll/ stdout 2017-07-11T15:02:51.035518:target volume orig stdout 2017-07-11T15:02:51.035518:tkregister2_cmdl --s sub-01 --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii --regheader --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.init.dat --noedit stdout 2017-07-11T15:02:51.035518:tkregister_tcl /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools/tkregister2.tcl stdout 2017-07-11T15:02:51.035518:tmp /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115 stdout 2017-07-11T15:02:51.035518:writing to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii... stdout 2017-07-11T15:02:51.541422: stdout 2017-07-11T15:02:51.541422: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:02:51.541422: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:02:51.541422: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:02:51.541422: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:02:51.541422: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:02:51.541422: 0.02340 0.11325 0.99329 -14.29306; stdout 2017-07-11T15:02:51.541422: 0.02340 0.11325 0.99329 -14.29306; stdout 2017-07-11T15:02:51.541422: 0.02340 0.11325 0.99329 -14.29306; stdout 2017-07-11T15:02:51.541422: 0.02340 0.11325 0.99329 -14.29306; stdout 2017-07-11T15:02:51.541422: 0.99947 0.01963 -0.02579 -1.37646; stdout 2017-07-11T15:02:51.541422: 0.99947 0.01963 -0.02579 -1.37646; stdout 2017-07-11T15:02:51.541422: 0.99947 0.01963 -0.02579 -1.37646; stdout 2017-07-11T15:02:51.541422: 0.99947 0.01963 -0.02579 -1.37646; stdout 2017-07-11T15:02:51.541422:$Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ stdout 2017-07-11T15:02:51.541422:---- Input registration matrix (computed) -------- stdout 2017-07-11T15:02:51.541422:---- Input registration matrix -------- stdout 2017-07-11T15:02:51.541422:--------------------------------------- stdout 2017-07-11T15:02:51.541422:-0.02242 0.99337 -0.11273 20.35101; stdout 2017-07-11T15:02:51.541422:-0.02242 0.99337 -0.11273 20.35101; stdout 2017-07-11T15:02:51.541422:-0.02242 0.99337 -0.11273 20.35101; stdout 2017-07-11T15:02:51.541422:-0.02242 0.99337 -0.11273 20.35101; stdout 2017-07-11T15:02:51.541422:AddNoise 0 (0) stdout 2017-07-11T15:02:51.541422:Computing reg from header (and possibly input matrix) stdout 2017-07-11T15:02:51.541422:Determinant -1 stdout 2017-07-11T15:02:51.541422:GMProjFrac 0.500000 stdout 2017-07-11T15:02:51.541422:Gdiag_no -1 stdout 2017-07-11T15:02:51.541422:Input reg stdout 2017-07-11T15:02:51.541422:PenaltyCenter 0.000000 stdout 2017-07-11T15:02:51.541422:PenaltySign -1 stdout 2017-07-11T15:02:51.541422:PenaltySlope 0.500000 stdout 2017-07-11T15:02:51.541422:Profile 0 stdout 2017-07-11T15:02:51.541422:RegMat --------------------------- stdout 2017-07-11T15:02:51.541422:RotRandMax 0.000000 stdout 2017-07-11T15:02:51.541422:Rotations 0.000000 0.000000 0.000000 stdout 2017-07-11T15:02:51.541422:SynthSeed 1500716585 stdout 2017-07-11T15:02:51.541422:TolPowell 0.000100 stdout 2017-07-11T15:02:51.541422:TransRandMax 0.000000 stdout 2017-07-11T15:02:51.541422:Translations 0.000000 0.000000 0.000000 stdout 2017-07-11T15:02:51.541422:UseLH 1 stdout 2017-07-11T15:02:51.541422:UseMask 1 stdout 2017-07-11T15:02:51.541422:UseRH 1 stdout 2017-07-11T15:02:51.541422:WMProjAbs 2.000000 stdout 2017-07-11T15:02:51.541422:cd /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0 stdout 2017-07-11T15:02:51.541422:dof 6 stdout 2017-07-11T15:02:51.541422:frame 0 stdout 2017-07-11T15:02:51.541422:hostname marillion stdout 2017-07-11T15:02:51.541422:interp trilinear (1) stdout 2017-07-11T15:02:51.541422:lhcostfile (null) stdout 2017-07-11T15:02:51.541422:machine x86_64 stdout 2017-07-11T15:02:51.541422:mkheaderreg = 1, float2int = 0 stdout 2017-07-11T15:02:51.541422:movvol /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii stdout 2017-07-11T15:02:51.541422:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.init.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 --mask stdout 2017-07-11T15:02:51.541422:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.init.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 --mask stdout 2017-07-11T15:02:51.541422:n1dmin 3 stdout 2017-07-11T15:02:51.541422:nMaxItersPowell 36 stdout 2017-07-11T15:02:51.541422:nsubsamp 100 stdout 2017-07-11T15:02:51.541422:outregfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat stdout 2017-07-11T15:02:51.541422:regfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.init.dat stdout 2017-07-11T15:02:51.541422:rhcostfile (null) stdout 2017-07-11T15:02:51.541422:setenv SUBJECTS_DIR /data/pt_nmc002/TDMGB_FMRI_ReconAll/ stdout 2017-07-11T15:02:51.541422:subject = sub-01 stdout 2017-07-11T15:02:51.541422:subject sub-01 stdout 2017-07-11T15:02:51.541422:surfname white stdout 2017-07-11T15:02:51.541422:sysname Linux stdout 2017-07-11T15:02:51.541422:user mihai stdout 2017-07-11T15:02:56.137202:GM Proj: 1 0.500000 2.000000 stdout 2017-07-11T15:02:56.137202:Loading lh.thickness for GM stdout 2017-07-11T15:02:56.137202:Loading lh.white surf stdout 2017-07-11T15:02:56.137202:Loading mov stdout 2017-07-11T15:02:56.137202:Projecting LH Surfs stdout 2017-07-11T15:02:56.137202:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/lh.aparc.annot stdout 2017-07-11T15:02:56.137202:WM Proj: 0 0.500000 2.000000 stdout 2017-07-11T15:02:56.137202:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) stdout 2017-07-11T15:02:56.137202:reading colortable from annotation file... stdout 2017-07-11T15:02:59.704633:Loading rh.thickness for GM stdout 2017-07-11T15:02:59.704633:Loading rh.white surf stdout 2017-07-11T15:02:59.704633:Projecting RH Surfs stdout 2017-07-11T15:02:59.704633:Projecting RH Surfs stdout 2017-07-11T15:02:59.704633:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/rh.aparc.annot stdout 2017-07-11T15:02:59.704633:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) stdout 2017-07-11T15:02:59.704633:reading colortable from annotation file... stdout 2017-07-11T15:03:00.206563: stdout 2017-07-11T15:03:00.206563: 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9903 0.9903 0.0 stdout 2017-07-11T15:03:00.206563: 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9682 0.9682 0.0 stdout 2017-07-11T15:03:00.206563: 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9622 0.9622 0.0 stdout 2017-07-11T15:03:00.206563: 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9247 0.9247 0.0 stdout 2017-07-11T15:03:00.206563: 21 -4.0000 -4.0000 -4.0000 4.0000 0.0000 -4.0000 0.8951 0.8951 0.0 stdout 2017-07-11T15:03:00.206563: 0 -25.0 -25.0 -25.0 0.932374 stdout 2017-07-11T15:03:00.206563: 1 -25.0 -25.0 25.0 1.012197 stdout 2017-07-11T15:03:00.206563: 2 -25.0 25.0 -25.0 1.022095 stdout 2017-07-11T15:03:00.206563: 3 -25.0 25.0 25.0 1.043949 stdout 2017-07-11T15:03:00.206563: 4 25.0 -25.0 -25.0 1.008268 stdout 2017-07-11T15:03:00.206563: 5 25.0 -25.0 25.0 1.007735 stdout 2017-07-11T15:03:00.206563: 6 25.0 25.0 -25.0 1.130830 stdout 2017-07-11T15:03:00.206563: 7 25.0 25.0 25.0 1.041108 stdout 2017-07-11T15:03:00.206563:------------------------------------ stdout 2017-07-11T15:03:00.206563:Brute force preopt -4 4 4, n = 729 stdout 2017-07-11T15:03:00.206563:Computing relative cost stdout 2017-07-11T15:03:00.206563:Cost 0.9013 stdout 2017-07-11T15:03:00.206563:Ctx Intensity 1308.0206 +/- 449.5411 stdout 2017-07-11T15:03:00.206563:Initial costs ---------------- stdout 2017-07-11T15:03:00.206563:Number of surface hits 637 stdout 2017-07-11T15:03:00.206563:Pct Contrast 0.1004 +/- 30.9088 stdout 2017-07-11T15:03:00.206563:REL: 8 0.901344 8.198556 1.024819 rel = 0.879515 stdout 2017-07-11T15:03:00.206563:RelCost 0.8795 stdout 2017-07-11T15:03:00.206563:Using lh.cortex.label stdout 2017-07-11T15:03:00.206563:Using rh.cortex.label stdout 2017-07-11T15:03:00.206563:WM Intensity 1294.4261 +/- 436.2681 stdout 2017-07-11T15:03:00.710152: 80 -4.0000 -4.0000 4.0000 4.0000 4.0000 4.0000 0.8698 0.8698 0.0 stdout 2017-07-11T15:03:01.211416: 343 0.0000 0.0000 -4.0000 4.0000 -4.0000 0.0000 0.8399 0.8399 0.0 stdout 2017-07-11T15:03:01.211416: 369 0.0000 0.0000 0.0000 4.0000 -4.0000 -4.0000 0.7041 0.7041 0.0 stdout 2017-07-11T15:03:01.211416: 370 0.0000 0.0000 0.0000 4.0000 -4.0000 0.0000 0.6510 0.6510 0.0 stdout 2017-07-11T15:03:01.712896: stdout 2017-07-11T15:03:01.712896: 7 -0.078 0.000 0.000 4.000 -4.000 0.000 0.6463270584 stdout 2017-07-11T15:03:01.712896: 9 -0.099 0.000 0.000 4.000 -4.000 0.000 0.6459849540 stdout 2017-07-11T15:03:01.712896: 0.000 0.000 0.000 4.000 -4.000 0.000 stdout 2017-07-11T15:03:01.712896: 19 -0.099 -0.094 0.000 4.000 -4.000 0.000 0.6410013494 stdout 2017-07-11T15:03:01.712896: 21 -0.099 -0.133 0.000 4.000 -4.000 0.000 0.6397169934 stdout 2017-07-11T15:03:01.712896: 23 -0.099 -0.141 0.000 4.000 -4.000 0.000 0.6396395724 stdout 2017-07-11T15:03:01.712896: 24 -0.099 -0.145 0.000 4.000 -4.000 0.000 0.6396314647 stdout 2017-07-11T15:03:01.712896: 25 -0.099 -0.144 0.000 4.000 -4.000 0.000 0.6396309937 stdout 2017-07-11T15:03:01.712896: 33 -0.099 -0.144 -0.217 4.000 -4.000 0.000 0.6365938473 stdout 2017-07-11T15:03:01.712896: 34 -0.099 -0.144 -0.198 4.000 -4.000 0.000 0.6361866942 stdout 2017-07-11T15:03:01.712896: 35 -0.099 -0.144 -0.148 4.000 -4.000 0.000 0.6356996887 stdout 2017-07-11T15:03:01.712896: 37 -0.099 -0.144 -0.160 4.000 -4.000 0.000 0.6356047336 stdout 2017-07-11T15:03:01.712896: 39 -0.099 -0.144 -0.162 4.000 -4.000 0.000 0.6355939094 stdout 2017-07-11T15:03:01.712896: 40 -0.099 -0.144 -0.165 4.000 -4.000 0.000 0.6355838205 stdout 2017-07-11T15:03:01.712896: 48 -0.099 -0.144 -0.165 3.382 -4.000 0.000 0.5992600252 stdout 2017-07-11T15:03:01.712896: 52 -0.099 -0.144 -0.165 3.412 -4.000 0.000 0.5987336050 stdout 2017-07-11T15:03:01.712896: 53 -0.099 -0.144 -0.165 3.428 -4.000 0.000 0.5986338394 stdout 2017-07-11T15:03:01.712896: 55 -0.099 -0.144 -0.165 3.422 -4.000 0.000 0.5985974544 stdout 2017-07-11T15:03:01.712896: 56 -0.099 -0.144 -0.165 3.423 -4.000 0.000 0.5985970242 stdout 2017-07-11T15:03:01.712896: 64 -0.099 -0.144 -0.165 3.423 -3.956 0.000 0.5970473271 stdout 2017-07-11T15:03:01.712896: ftol 0.000100 stdout 2017-07-11T15:03:01.712896: linmin_xtol_ 0.001000 stdout 2017-07-11T15:03:01.712896: maxfev 36 stdout 2017-07-11T15:03:01.712896: nparams 6 stdout 2017-07-11T15:03:01.712896: powell nthiter 0: fret = 0.650960 stdout 2017-07-11T15:03:01.712896:-------------------------------------------- stdout 2017-07-11T15:03:01.712896:0 0 stdout 2017-07-11T15:03:01.712896:1 0 stdout 2017-07-11T15:03:01.712896:2 0 stdout 2017-07-11T15:03:01.712896:3 4 stdout 2017-07-11T15:03:01.712896:4 -4 stdout 2017-07-11T15:03:01.712896:5 0 stdout 2017-07-11T15:03:01.712896:Brute Force -------------------------- stdout 2017-07-11T15:03:01.712896:Init Powel Params dof = 6 stdout 2017-07-11T15:03:01.712896:Min cost was 0.650960 stdout 2017-07-11T15:03:01.712896:Number of iterations 729 stdout 2017-07-11T15:03:01.712896:Parameters at best (transmm, rotdeg) stdout 2017-07-11T15:03:01.712896:Search time 1.482000 sec stdout 2017-07-11T15:03:01.712896:Starting Powell Minimization stdout 2017-07-11T15:03:01.712896:fs_powell::minimize stdout 2017-07-11T15:03:02.218225: 68 -0.099 -0.144 -0.165 3.423 -3.955 0.000 0.5970449085 stdout 2017-07-11T15:03:02.218225: 78 -0.099 -0.144 -0.165 3.423 -3.955 -0.107 0.5930864325 stdout 2017-07-11T15:03:02.218225: 79 -0.099 -0.144 -0.165 3.423 -3.955 -0.103 0.5927782377 stdout 2017-07-11T15:03:02.218225: 80 -0.099 -0.144 -0.165 3.423 -3.955 -0.072 0.5921077266 stdout 2017-07-11T15:03:02.218225: 83 -0.099 -0.144 -0.165 3.423 -3.955 -0.073 0.5921064031 stdout 2017-07-11T15:03:02.218225: 86 -0.099 -0.144 -0.165 3.423 -3.955 -0.075 0.5921059474 stdout 2017-07-11T15:03:02.218225: 98 -0.093 -0.144 -0.165 3.423 -3.955 -0.075 0.5920709719 stdout 2017-07-11T15:03:02.218225: powell nthiter 1: fret = 0.592106 stdout 2017-07-11T15:03:02.218225: powell nthiter 2: fret = 0.589289 stdout 2017-07-11T15:03:02.218225: powell nthiter 3: fret = 0.588636 stdout 2017-07-11T15:03:02.218225: 100 -0.094 -0.144 -0.165 3.423 -3.955 -0.075 0.5920695911 stdout 2017-07-11T15:03:02.218225: 111 -0.094 -0.110 -0.165 3.423 -3.955 -0.075 0.5912639169 stdout 2017-07-11T15:03:02.218225: 112 -0.094 -0.118 -0.165 3.423 -3.955 -0.075 0.5909820850 stdout 2017-07-11T15:03:02.218225: 114 -0.094 -0.119 -0.165 3.423 -3.955 -0.075 0.5909771113 stdout 2017-07-11T15:03:02.218225: 125 -0.094 -0.119 -0.131 3.423 -3.955 -0.075 0.5900856483 stdout 2017-07-11T15:03:02.218225: 128 -0.094 -0.119 -0.127 3.423 -3.955 -0.075 0.5900704471 stdout 2017-07-11T15:03:02.218225: 129 -0.094 -0.119 -0.126 3.423 -3.955 -0.075 0.5900698205 stdout 2017-07-11T15:03:02.218225: 139 -0.094 -0.119 -0.126 3.438 -3.955 -0.075 0.5898972477 stdout 2017-07-11T15:03:02.218225: 152 -0.094 -0.119 -0.126 3.438 -3.978 -0.075 0.5894115091 stdout 2017-07-11T15:03:02.218225: 153 -0.094 -0.119 -0.126 3.438 -3.980 -0.075 0.5894063625 stdout 2017-07-11T15:03:02.218225: 154 -0.094 -0.119 -0.126 3.438 -3.982 -0.075 0.5893996149 stdout 2017-07-11T15:03:02.218225: 169 -0.094 -0.119 -0.126 3.438 -3.982 -0.070 0.5893025166 stdout 2017-07-11T15:03:02.218225: 170 -0.094 -0.119 -0.126 3.438 -3.982 -0.069 0.5892886632 stdout 2017-07-11T15:03:02.218225: 182 -0.093 -0.119 -0.126 3.438 -3.982 -0.069 0.5892867974 stdout 2017-07-11T15:03:02.218225: 206 -0.093 -0.119 -0.128 3.438 -3.982 -0.069 0.5892842650 stdout 2017-07-11T15:03:02.218225: 214 -0.093 -0.119 -0.128 3.407 -3.982 -0.069 0.5887376115 stdout 2017-07-11T15:03:02.218225: 221 -0.093 -0.119 -0.128 3.409 -3.982 -0.069 0.5886760137 stdout 2017-07-11T15:03:02.218225: 234 -0.093 -0.119 -0.128 3.409 -3.987 -0.069 0.5886742999 stdout 2017-07-11T15:03:02.218225: 235 -0.093 -0.119 -0.128 3.409 -3.985 -0.069 0.5886703177 stdout 2017-07-11T15:03:02.218225: 247 -0.093 -0.119 -0.128 3.409 -3.985 -0.068 0.5886367279 stdout 2017-07-11T15:03:02.218225: 249 -0.093 -0.119 -0.128 3.409 -3.985 -0.067 0.5886357828 stdout 2017-07-11T15:03:02.218225: 260 -0.095 -0.119 -0.128 3.409 -3.985 -0.067 0.5886349994 stdout 2017-07-11T15:03:02.218225: 275 -0.095 -0.123 -0.128 3.409 -3.985 -0.067 0.5886126372 stdout 2017-07-11T15:03:02.218225: 288 -0.095 -0.123 -0.127 3.409 -3.985 -0.067 0.5886095973 stdout 2017-07-11T15:03:02.218225: 289 -0.095 -0.123 -0.125 3.409 -3.985 -0.067 0.5886082100 stdout 2017-07-11T15:03:02.218225: 300 -0.095 -0.123 -0.125 3.411 -3.985 -0.067 0.5885659003 stdout 2017-07-11T15:03:02.218225: 302 -0.095 -0.123 -0.125 3.412 -3.985 -0.067 0.5885483131 stdout 2017-07-11T15:03:02.218225: 303 -0.095 -0.123 -0.125 3.413 -3.985 -0.067 0.5885278371 stdout 2017-07-11T15:03:02.218225: 326 -0.095 -0.123 -0.125 3.413 -3.985 -0.071 0.5884590208 stdout 2017-07-11T15:03:02.218225: 327 -0.095 -0.123 -0.125 3.413 -3.985 -0.070 0.5884427973 stdout 2017-07-11T15:03:02.218225: 329 -0.096 -0.126 -0.122 3.418 -3.985 -0.074 0.5883269559 stdout 2017-07-11T15:03:02.218225: 334 -0.097 -0.128 -0.121 3.420 -3.985 -0.076 0.5883033593 stdout 2017-07-11T15:03:02.723836: stdout 2017-07-11T15:03:02.723836: stdout 2017-07-11T15:03:02.723836: stdout 2017-07-11T15:03:02.723836: powell nthiter 4: fret = 0.588303 stdout 2017-07-11T15:03:02.723836: 0 -25.0 -25.0 -25.0 0.992978 stdout 2017-07-11T15:03:02.723836: 0.00000 0.00000 0.00000 0.00000; stdout 2017-07-11T15:03:02.723836: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:03:02.723836: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:03:02.723836: 0.00003 0.05944 -0.00499 1.31404; stdout 2017-07-11T15:03:02.723836: 0.00093 0.06944 -0.00510 1.46763; stdout 2017-07-11T15:03:02.723836: 0.02337 0.05380 0.99828 -15.60710; stdout 2017-07-11T15:03:02.723836: 0.02340 0.11325 0.99329 -14.29306; stdout 2017-07-11T15:03:02.723836: 0.04861 0.99731 -0.05489 19.20110; stdout 2017-07-11T15:03:02.723836: 0.99854 -0.04981 -0.02069 -2.84409; stdout 2017-07-11T15:03:02.723836: 0.99947 0.01963 -0.02579 -1.37646; stdout 2017-07-11T15:03:02.723836: 1 -25.0 -25.0 25.0 1.010547 stdout 2017-07-11T15:03:02.723836: 2 -25.0 25.0 -25.0 1.050723 stdout 2017-07-11T15:03:02.723836: 3 -25.0 25.0 25.0 1.055211 stdout 2017-07-11T15:03:02.723836: 336 -0.097 -0.128 -0.121 3.420 -3.985 -0.076 0.5883029830 stdout 2017-07-11T15:03:02.723836: 342 -0.097 -0.128 -0.121 3.420 -3.985 -0.076 0.5883029729 stdout 2017-07-11T15:03:02.723836: 343 -0.097 -0.128 -0.121 3.420 -3.985 -0.076 0.5883028397 stdout 2017-07-11T15:03:02.723836: 355 -0.096 -0.128 -0.121 3.420 -3.985 -0.076 0.5883012029 stdout 2017-07-11T15:03:02.723836: 380 -0.096 -0.128 -0.120 3.420 -3.985 -0.076 0.5882972715 stdout 2017-07-11T15:03:02.723836: 381 -0.096 -0.128 -0.117 3.420 -3.985 -0.076 0.5882921346 stdout 2017-07-11T15:03:02.723836: 393 -0.096 -0.128 -0.117 3.421 -3.985 -0.076 0.5882894252 stdout 2017-07-11T15:03:02.723836: 394 -0.096 -0.128 -0.117 3.423 -3.985 -0.076 0.5882881088 stdout 2017-07-11T15:03:02.723836: 4 25.0 -25.0 -25.0 0.951222 stdout 2017-07-11T15:03:02.723836: 406 -0.096 -0.128 -0.117 3.423 -3.990 -0.076 0.5882657615 stdout 2017-07-11T15:03:02.723836: 418 -0.096 -0.128 -0.117 3.423 -3.990 -0.076 0.5882656619 stdout 2017-07-11T15:03:02.723836: 5 25.0 -25.0 25.0 0.939224 stdout 2017-07-11T15:03:02.723836: 6 25.0 25.0 -25.0 1.052731 stdout 2017-07-11T15:03:02.723836: 7 25.0 25.0 25.0 0.973276 stdout 2017-07-11T15:03:02.723836:$Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ stdout 2017-07-11T15:03:02.723836:-0.02242 0.99337 -0.11273 20.35101; stdout 2017-07-11T15:03:02.723836:-0.07103 -0.00394 -0.05784 1.14991; stdout 2017-07-11T15:03:02.723836:Computing change in lh position stdout 2017-07-11T15:03:02.723836:Computing change in rh position stdout 2017-07-11T15:03:02.723836:Computing relative cost stdout 2017-07-11T15:03:02.723836:Cost 0.5883 stdout 2017-07-11T15:03:02.723836:Ctx Intensity 1312.8025 +/- 476.3953 stdout 2017-07-11T15:03:02.723836:Final costs ---------------- stdout 2017-07-11T15:03:02.723836:LH rmsDiffMean 3.981977 stdout 2017-07-11T15:03:02.723836:Min cost was 0.588266 stdout 2017-07-11T15:03:02.723836:Number of FunctionCalls 428 stdout 2017-07-11T15:03:02.723836:Number of iterations 4 stdout 2017-07-11T15:03:02.723836:Number of surface hits 672 stdout 2017-07-11T15:03:02.723836:OptimizationTime 0.825000 sec stdout 2017-07-11T15:03:02.723836:Original Reg stdout 2017-07-11T15:03:02.723836:Original Reg - Optimal Reg stdout 2017-07-11T15:03:02.723836:Parameters at optimum (rotdeg) 3.42281 -3.98974 -0.07636 stdout 2017-07-11T15:03:02.723836:Parameters at optimum (transmm) -0.09625 -0.12816 -0.11733 stdout 2017-07-11T15:03:02.723836:Pct Contrast 6.3943 +/- 30.9623 stdout 2017-07-11T15:03:02.723836:Powell done niters = 4 stdout 2017-07-11T15:03:02.723836:REL: 8 0.588266 8.025913 1.003239 rel = 0.586366 stdout 2017-07-11T15:03:02.723836:Reg at min cost was stdout 2017-07-11T15:03:02.723836:RelCost 0.8795 stdout 2017-07-11T15:03:02.723836:Surface-RMS-Diff-mm 4.220776 1.587678 8.315554 stdout 2017-07-11T15:03:02.723836:TolPowell 0.000100 stdout 2017-07-11T15:03:02.723836:WM Intensity 1222.3930 +/- 438.7101 stdout 2017-07-11T15:03:02.723836:Writing optimal reg to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat, type = 14 stdout 2017-07-11T15:03:02.723836:cd /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0 stdout 2017-07-11T15:03:02.723836:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.mincost --dof 6 --nmax 36 --param /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --mask --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --gm-gt-wm 0.5 stdout 2017-07-11T15:03:02.723836:mri_segreg done stdout 2017-07-11T15:03:02.723836:nMaxItersPowell 36 stdout 2017-07-11T15:03:02.723836:setenv SUBJECTS_DIR /data/pt_nmc002/TDMGB_FMRI_ReconAll/ stdout 2017-07-11T15:03:03.231910: stdout 2017-07-11T15:03:03.231910: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:03:03.231910: 0.02337 0.05380 0.99828 -15.60710; stdout 2017-07-11T15:03:03.231910: 0.04861 0.99731 -0.05489 19.20110; stdout 2017-07-11T15:03:03.231910: 0.99854 -0.04981 -0.02069 -2.84409; stdout 2017-07-11T15:03:03.231910:AddNoise 0 (0) stdout 2017-07-11T15:03:03.231910:GMProjFrac 0.500000 stdout 2017-07-11T15:03:03.231910:Gdiag_no -1 stdout 2017-07-11T15:03:03.231910:Input reg stdout 2017-07-11T15:03:03.231910:PenaltyCenter 0.000000 stdout 2017-07-11T15:03:03.231910:PenaltySign -1 stdout 2017-07-11T15:03:03.231910:PenaltySlope 0.500000 stdout 2017-07-11T15:03:03.231910:Profile 0 stdout 2017-07-11T15:03:03.231910:RotRandMax 0.000000 stdout 2017-07-11T15:03:03.231910:Rotations 0.000000 0.000000 0.000000 stdout 2017-07-11T15:03:03.231910:SynthSeed 1500391901 stdout 2017-07-11T15:03:03.231910:TolPowell 0.000000 stdout 2017-07-11T15:03:03.231910:TransRandMax 0.000000 stdout 2017-07-11T15:03:03.231910:Translations 0.000000 0.000000 0.000000 stdout 2017-07-11T15:03:03.231910:UseLH 1 stdout 2017-07-11T15:03:03.231910:UseMask 1 stdout 2017-07-11T15:03:03.231910:UseRH 1 stdout 2017-07-11T15:03:03.231910:WMProjAbs 2.000000 stdout 2017-07-11T15:03:03.231910:dof 6 stdout 2017-07-11T15:03:03.231910:frame 0 stdout 2017-07-11T15:03:03.231910:hostname marillion stdout 2017-07-11T15:03:03.231910:interp trilinear (1) stdout 2017-07-11T15:03:03.231910:lhcostfile (null) stdout 2017-07-11T15:03:03.231910:machine x86_64 stdout 2017-07-11T15:03:03.231910:movvol /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii stdout 2017-07-11T15:03:03.231910:mri_segreg --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/template.nii --init-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat --out-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.mincost --dof 6 --nmax 36 --param /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --mask --o /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii --gm-gt-wm 0.5 stdout 2017-07-11T15:03:03.231910:n1dmin 3 stdout 2017-07-11T15:03:03.231910:nMaxItersPowell 36 stdout 2017-07-11T15:03:03.231910:nsubsamp 1 stdout 2017-07-11T15:03:03.231910:outfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii stdout 2017-07-11T15:03:03.231910:outregfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat stdout 2017-07-11T15:03:03.231910:regfile /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/tmp.bbregister.1908115/bbr.pass1.dat stdout 2017-07-11T15:03:03.231910:rhcostfile (null) stdout 2017-07-11T15:03:03.231910:subject sub-01 stdout 2017-07-11T15:03:03.231910:surfname white stdout 2017-07-11T15:03:03.231910:sysname Linux stdout 2017-07-11T15:03:03.231910:user mihai stdout 2017-07-11T15:03:07.824163:GM Proj: 1 0.500000 2.000000 stdout 2017-07-11T15:03:07.824163:Loading lh.thickness for GM stdout 2017-07-11T15:03:07.824163:Loading lh.white surf stdout 2017-07-11T15:03:07.824163:Loading mov stdout 2017-07-11T15:03:07.824163:Projecting LH Surfs stdout 2017-07-11T15:03:07.824163:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/lh.aparc.annot stdout 2017-07-11T15:03:07.824163:WM Proj: 0 0.500000 2.000000 stdout 2017-07-11T15:03:07.824163:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) stdout 2017-07-11T15:03:07.824163:reading colortable from annotation file... stdout 2017-07-11T15:03:11.392482:Loading rh.thickness for GM stdout 2017-07-11T15:03:11.392482:Loading rh.white surf stdout 2017-07-11T15:03:11.392482:Projecting RH Surfs stdout 2017-07-11T15:03:11.392482:Projecting RH Surfs stdout 2017-07-11T15:03:11.392482:Reading /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/label/rh.aparc.annot stdout 2017-07-11T15:03:11.894546:colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) stdout 2017-07-11T15:03:11.894546:reading colortable from annotation file... stdout 2017-07-11T15:03:12.907280: stdout 2017-07-11T15:03:12.907280: 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.6121 0.6121 0.0 stdout 2017-07-11T15:03:12.907280: 3 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.6099 0.6099 0.0 stdout 2017-07-11T15:03:12.907280: 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.6026 0.6026 0.0 stdout 2017-07-11T15:03:12.907280: 12 -0.1000 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.5989 0.5989 0.0 stdout 2017-07-11T15:03:12.907280: 15 -0.1000 -0.1000 -0.1000 0.0000 0.1000 -0.1000 0.5988 0.5988 0.0 stdout 2017-07-11T15:03:12.907280: 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.5977 0.5977 0.0 stdout 2017-07-11T15:03:12.907280: 39 -0.1000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.5946 0.5946 0.0 stdout 2017-07-11T15:03:12.907280: 0 -25.0 -25.0 -25.0 0.982982 stdout 2017-07-11T15:03:12.907280: 1 -25.0 -25.0 25.0 1.019603 stdout 2017-07-11T15:03:12.907280: 2 -25.0 25.0 -25.0 1.044466 stdout 2017-07-11T15:03:12.907280: 3 -25.0 25.0 25.0 0.989706 stdout 2017-07-11T15:03:12.907280: 4 25.0 -25.0 -25.0 1.002362 stdout 2017-07-11T15:03:12.907280: 5 25.0 -25.0 25.0 0.989791 stdout 2017-07-11T15:03:12.907280: 6 25.0 25.0 -25.0 1.016252 stdout 2017-07-11T15:03:12.907280: 7 25.0 25.0 25.0 0.975084 stdout 2017-07-11T15:03:12.907280:------------------------------------ stdout 2017-07-11T15:03:12.907280:Brute force preopt -0.1 0.1 0.1, n = 729 stdout 2017-07-11T15:03:12.907280:Computing relative cost stdout 2017-07-11T15:03:12.907280:Cost 0.6815 stdout 2017-07-11T15:03:12.907280:Ctx Intensity 1315.8226 +/- 493.5261 stdout 2017-07-11T15:03:12.907280:Initial costs ---------------- stdout 2017-07-11T15:03:12.907280:Number of surface hits 64792 stdout 2017-07-11T15:03:12.907280:Pct Contrast 4.0442 +/- 33.1300 stdout 2017-07-11T15:03:12.907280:REL: 8 0.681457 8.020246 1.002531 rel = 0.679737 stdout 2017-07-11T15:03:12.907280:RelCost 0.6797 stdout 2017-07-11T15:03:12.907280:Using lh.cortex.label stdout 2017-07-11T15:03:12.907280:Using rh.cortex.label stdout 2017-07-11T15:03:12.907280:WM Intensity 1241.3783 +/- 436.6458 stdout 2017-07-11T15:03:13.411470: 121 -0.1000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5941 0.5941 0.0 stdout 2017-07-11T15:03:13.411470: 282 0.0000 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.5916 0.5916 0.0 stdout 2017-07-11T15:03:13.912923: 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.5883 0.5883 0.0 stdout 2017-07-11T15:03:14.925446: stdout 2017-07-11T15:03:14.925446: 6 0.382 0.000 0.000 0.000 0.000 0.000 0.6806953885 stdout 2017-07-11T15:03:14.925446: 0.000 0.000 0.000 0.000 0.000 0.000 stdout 2017-07-11T15:03:14.925446: ftol 0.000000 stdout 2017-07-11T15:03:14.925446: linmin_xtol_ 0.001000 stdout 2017-07-11T15:03:14.925446: maxfev 36 stdout 2017-07-11T15:03:14.925446: nparams 6 stdout 2017-07-11T15:03:14.925446: powell nthiter 0: fret = 0.681457 stdout 2017-07-11T15:03:14.925446:-------------------------------------------- stdout 2017-07-11T15:03:14.925446:0 0 stdout 2017-07-11T15:03:14.925446:1 0 stdout 2017-07-11T15:03:14.925446:2 0 stdout 2017-07-11T15:03:14.925446:3 0 stdout 2017-07-11T15:03:14.925446:4 0 stdout 2017-07-11T15:03:14.925446:5 0 stdout 2017-07-11T15:03:14.925446:Brute Force -------------------------- stdout 2017-07-11T15:03:14.925446:Init Powel Params dof = 6 stdout 2017-07-11T15:03:14.925446:Min cost was 0.588266 stdout 2017-07-11T15:03:14.925446:Number of iterations 729 stdout 2017-07-11T15:03:14.925446:Parameters at best (transmm, rotdeg) stdout 2017-07-11T15:03:14.925446:Search time 1.606000 sec stdout 2017-07-11T15:03:14.925446:Starting Powell Minimization stdout 2017-07-11T15:03:14.925446:fs_powell::minimize stdout 2017-07-11T15:03:15.428985: 7 0.224 0.000 0.000 0.000 0.000 0.000 0.6798040006 stdout 2017-07-11T15:03:15.930507: 18 0.224 0.382 0.000 0.000 0.000 0.000 0.6764590845 stdout 2017-07-11T15:03:16.431681: 19 0.224 0.252 0.000 0.000 0.000 0.000 0.6753193177 stdout 2017-07-11T15:03:16.431681: 21 0.224 0.156 0.000 0.000 0.000 0.000 0.6752502270 stdout 2017-07-11T15:03:16.431681: 22 0.224 0.203 0.000 0.000 0.000 0.000 0.6750214739 stdout 2017-07-11T15:03:16.431681: 23 0.224 0.201 0.000 0.000 0.000 0.000 0.6749899124 stdout 2017-07-11T15:03:16.933276: 24 0.224 0.185 0.000 0.000 0.000 0.000 0.6748811040 stdout 2017-07-11T15:03:16.933276: 28 0.224 0.183 0.000 0.000 0.000 0.000 0.6748745107 stdout 2017-07-11T15:03:17.434321: 34 0.224 0.183 -0.618 0.000 0.000 0.000 0.6730507313 stdout 2017-07-11T15:03:17.935739: 36 0.224 0.183 -0.347 0.000 0.000 0.000 0.6691838217 stdout 2017-07-11T15:03:17.935739: 38 0.224 0.183 -0.372 0.000 0.000 0.000 0.6690921874 stdout 2017-07-11T15:03:18.947648: 45 0.224 0.183 -0.373 0.000 0.000 0.000 0.6690918062 stdout 2017-07-11T15:03:19.448963: 53 0.224 0.183 -0.373 -0.189 0.000 0.000 0.6687635988 stdout 2017-07-11T15:03:19.950443: 54 0.224 0.183 -0.373 -0.128 0.000 0.000 0.6684958950 stdout 2017-07-11T15:03:19.950443: 56 0.224 0.183 -0.373 -0.132 0.000 0.000 0.6684385984 stdout 2017-07-11T15:03:20.451777: 58 0.224 0.183 -0.373 -0.142 0.000 0.000 0.6684324827 stdout 2017-07-11T15:03:20.451777: 59 0.224 0.183 -0.373 -0.140 0.000 0.000 0.6684048354 stdout 2017-07-11T15:03:20.451777: 61 0.224 0.183 -0.373 -0.141 0.000 0.000 0.6683893885 stdout 2017-07-11T15:03:20.952836: 63 0.224 0.183 -0.373 -0.141 1.000 0.000 0.6584933318 stdout 2017-07-11T15:03:21.454436: 67 0.224 0.183 -0.373 -0.141 0.618 0.000 0.6560828475 stdout 2017-07-11T15:03:21.454436: 69 0.224 0.183 -0.373 -0.141 0.553 0.000 0.6557816268 stdout 2017-07-11T15:03:21.454436: 71 0.224 0.183 -0.373 -0.141 0.472 0.000 0.6553695583 stdout 2017-07-11T15:03:21.955522: 73 0.224 0.183 -0.373 -0.141 0.474 0.000 0.6553536235 stdout 2017-07-11T15:03:22.967764: 82 0.224 0.183 -0.373 -0.141 0.474 -0.618 0.6525952692 stdout 2017-07-11T15:03:22.967764: 84 0.224 0.183 -0.373 -0.141 0.474 -0.506 0.6521305224 stdout 2017-07-11T15:03:23.469203: 87 0.224 0.183 -0.373 -0.141 0.474 -0.508 0.6520796151 stdout 2017-07-11T15:03:23.970557: 91 0.224 0.183 -0.373 -0.141 0.474 -0.511 0.6520463240 stdout 2017-07-11T15:03:23.970557: 93 0.224 0.183 -0.373 -0.141 0.474 -0.510 0.6520457902 stdout 2017-07-11T15:03:23.970557: 94 0.447 0.367 -0.746 -0.281 0.948 -1.020 0.6517598376 stdout 2017-07-11T15:03:24.982930: powell nthiter 1: fret = 0.652046 stdout 2017-07-11T15:03:24.982930: 101 0.385 0.183 -0.373 -0.141 0.474 -0.510 0.6504329134 stdout 2017-07-11T15:03:24.982930: 102 0.390 0.183 -0.373 -0.141 0.474 -0.510 0.6504137604 stdout 2017-07-11T15:03:25.484405: 109 0.390 1.183 -0.373 -0.141 0.474 -0.510 0.6433243617 stdout 2017-07-11T15:03:25.985706: 113 0.390 0.801 -0.373 -0.141 0.474 -0.510 0.6337250630 stdout 2017-07-11T15:03:25.985706: 115 0.390 0.565 -0.373 -0.141 0.474 -0.510 0.6336931080 stdout 2017-07-11T15:03:25.985706: 116 0.390 0.683 -0.373 -0.141 0.474 -0.510 0.6323482488 stdout 2017-07-11T15:03:26.486766: 120 0.390 0.692 -0.373 -0.141 0.474 -0.510 0.6323015356 stdout 2017-07-11T15:03:27.498842: 129 0.390 0.692 0.009 -0.141 0.474 -0.510 0.6289704484 stdout 2017-07-11T15:03:28.000068: 132 0.390 0.692 0.073 -0.141 0.474 -0.510 0.6287886258 stdout 2017-07-11T15:03:28.000068: 134 0.390 0.692 0.062 -0.141 0.474 -0.510 0.6286875122 stdout 2017-07-11T15:03:29.012149: 144 0.390 0.692 0.062 -0.759 0.474 -0.510 0.6148918131 stdout 2017-07-11T15:03:29.012149: 146 0.390 0.692 0.062 -0.883 0.474 -0.510 0.6142803028 stdout 2017-07-11T15:03:29.513480: 148 0.390 0.692 0.062 -0.859 0.474 -0.510 0.6141975678 stdout 2017-07-11T15:03:29.513480: 151 0.390 0.692 0.062 -0.868 0.474 -0.510 0.6141701116 stdout 2017-07-11T15:03:30.014890: 157 0.390 0.692 0.062 -0.868 1.474 -0.510 0.6034831943 stdout 2017-07-11T15:03:30.516068: 161 0.390 0.692 0.062 -0.868 1.092 -0.510 0.5986537154 stdout 2017-07-11T15:03:30.516068: 162 0.390 0.692 0.062 -0.868 1.051 -0.510 0.5985201145 stdout 2017-07-11T15:03:31.017229: 166 0.390 0.692 0.062 -0.868 1.049 -0.510 0.5985176442 stdout 2017-07-11T15:03:31.017229: 167 0.390 0.692 0.062 -0.868 1.044 -0.510 0.5985069773 stdout 2017-07-11T15:03:31.017229: 170 0.390 0.692 0.062 -0.868 1.045 -0.510 0.5985064302 stdout 2017-07-11T15:03:31.518582: 176 0.390 0.692 0.062 -0.868 1.045 -1.128 0.5901184594 stdout 2017-07-11T15:03:32.019743: 182 0.390 0.692 0.062 -0.868 1.045 -1.113 0.5900840312 stdout 2017-07-11T15:03:32.520936: 184 0.390 0.692 0.062 -0.868 1.045 -1.104 0.5900629072 stdout 2017-07-11T15:03:32.520936: 187 0.390 0.692 0.062 -0.868 1.045 -1.105 0.5900547210 stdout 2017-07-11T15:03:32.520936: 188 0.557 1.201 0.497 -1.596 1.616 -1.700 0.5253746262 stdout 2017-07-11T15:03:33.021878: 193 0.660 1.515 0.766 -2.046 1.968 -2.067 0.4981176479 stdout 2017-07-11T15:03:33.522944: 195 0.661 1.518 0.768 -2.050 1.971 -2.071 0.4980599358 stdout 2017-07-11T15:03:33.522944: 196 0.669 1.544 0.790 -2.087 2.001 -2.101 0.4979476195 stdout 2017-07-11T15:03:33.522944: 198 0.666 1.535 0.782 -2.074 1.990 -2.090 0.4978830073 stdout 2017-07-11T15:03:33.522944: 199 0.666 1.534 0.782 -2.073 1.990 -2.090 0.4978513526 stdout 2017-07-11T15:03:33.522944: 200 0.664 1.528 0.777 -2.064 1.983 -2.082 0.4977640231 stdout 2017-07-11T15:03:34.024363: 203 0.664 1.527 0.776 -2.063 1.982 -2.082 0.4977434236 stdout 2017-07-11T15:03:34.024363: 205 0.664 1.527 0.776 -2.063 1.982 -2.081 0.4977390525 stdout 2017-07-11T15:03:34.525562: powell nthiter 2: fret = 0.497739 stdout 2017-07-11T15:03:34.525562: 207 1.664 1.527 0.776 -2.063 1.982 -2.081 0.4064013786 stdout 2017-07-11T15:03:34.525562: 212 1.774 1.527 0.776 -2.063 1.982 -2.081 0.4053270120 stdout 2017-07-11T15:03:35.027095: 214 1.763 1.527 0.776 -2.063 1.982 -2.081 0.4053014360 stdout 2017-07-11T15:03:35.027095: 217 1.758 1.527 0.776 -2.063 1.982 -2.081 0.4052936111 stdout 2017-07-11T15:03:35.027095: 218 1.757 1.527 0.776 -2.063 1.982 -2.081 0.4052918366 stdout 2017-07-11T15:03:35.528561: 222 1.757 1.527 0.776 -2.063 1.982 -1.081 0.3959630885 stdout 2017-07-11T15:03:36.029823: 226 1.757 1.527 0.776 -2.063 1.982 -1.463 0.3853693410 stdout 2017-07-11T15:03:36.029823: 228 1.757 1.527 0.776 -2.063 1.982 -1.498 0.3853073139 stdout 2017-07-11T15:03:36.531127: 231 1.757 1.527 0.776 -2.063 1.982 -1.520 0.3852784270 stdout 2017-07-11T15:03:36.531127: 232 1.757 1.527 0.776 -2.063 1.982 -1.514 0.3852536219 stdout 2017-07-11T15:03:36.531127: 233 1.757 1.527 0.776 -2.063 1.982 -1.511 0.3852433843 stdout 2017-07-11T15:03:37.032392: 241 1.757 1.527 0.158 -2.063 1.982 -1.511 0.3831672074 stdout 2017-07-11T15:03:37.533444: 243 1.757 1.527 0.432 -2.063 1.982 -1.511 0.3797391770 stdout 2017-07-11T15:03:37.533444: 244 1.757 1.527 0.430 -2.063 1.982 -1.511 0.3797242262 stdout 2017-07-11T15:03:37.533444: 247 1.757 1.527 0.420 -2.063 1.982 -1.511 0.3797048912 stdout 2017-07-11T15:03:38.034651: 251 1.757 1.527 0.421 -2.063 1.982 -1.511 0.3797009109 stdout 2017-07-11T15:03:38.535721: 259 1.757 1.527 0.421 -2.186 1.982 -1.511 0.3794811888 stdout 2017-07-11T15:03:39.036851: 260 1.757 1.527 0.421 -2.150 1.982 -1.511 0.3793736989 stdout 2017-07-11T15:03:39.036851: 262 1.757 1.527 0.421 -2.162 1.982 -1.511 0.3793143573 stdout 2017-07-11T15:03:39.036851: 264 1.757 1.527 0.421 -2.161 1.982 -1.511 0.3793033923 stdout 2017-07-11T15:03:39.036851: 265 1.757 1.527 0.421 -2.156 1.982 -1.511 0.3792699059 stdout 2017-07-11T15:03:39.538130: 267 1.757 1.527 0.421 -2.155 1.982 -1.511 0.3792674177 stdout 2017-07-11T15:03:39.538130: 268 1.757 1.527 0.421 -2.154 1.982 -1.511 0.3792440841 stdout 2017-07-11T15:03:40.039235: 274 1.757 1.527 0.421 -2.154 2.364 -1.511 0.3780735387 stdout 2017-07-11T15:03:40.039235: 275 1.757 1.527 0.421 -2.154 2.200 -1.511 0.3768038239 stdout 2017-07-11T15:03:40.540395: 280 1.757 1.527 0.421 -2.154 2.193 -1.511 0.3767808388 stdout 2017-07-11T15:03:40.540395: 282 1.757 1.527 0.421 -2.154 2.190 -1.511 0.3767710742 stdout 2017-07-11T15:03:41.041621: 285 1.757 1.527 0.421 -2.154 2.189 -1.511 0.3767686649 stdout 2017-07-11T15:03:41.542866: 291 1.820 1.721 0.587 -2.432 2.407 -1.738 0.3708032339 stdout 2017-07-11T15:03:41.542866: 292 1.804 1.671 0.544 -2.359 2.350 -1.679 0.3694223583 stdout 2017-07-11T15:03:42.555031: powell nthiter 3: fret = 0.369422 stdout 2017-07-11T15:03:42.555031: 306 1.895 1.671 0.544 -2.359 2.350 -1.679 0.3685722402 stdout 2017-07-11T15:03:42.555031: 307 1.901 1.671 0.544 -2.359 2.350 -1.679 0.3685411871 stdout 2017-07-11T15:03:43.056493: 309 1.932 1.671 0.544 -2.359 2.350 -1.679 0.3684604744 stdout 2017-07-11T15:03:43.056493: 311 1.928 1.671 0.544 -2.359 2.350 -1.679 0.3684563829 stdout 2017-07-11T15:03:44.069387: 322 1.928 1.671 0.544 -2.359 2.350 -1.297 0.3641760718 stdout 2017-07-11T15:03:44.069387: 323 1.928 1.671 0.544 -2.359 2.350 -1.396 0.3636040904 stdout 2017-07-11T15:03:44.069387: 324 1.928 1.671 0.544 -2.359 2.350 -1.395 0.3635698072 stdout 2017-07-11T15:03:44.570435: 327 1.928 1.671 0.544 -2.359 2.350 -1.387 0.3635489227 stdout 2017-07-11T15:03:44.570435: 328 1.928 1.671 0.544 -2.359 2.350 -1.388 0.3635466859 stdout 2017-07-11T15:03:45.583131: 336 1.928 1.671 0.401 -2.359 2.350 -1.388 0.3622834100 stdout 2017-07-11T15:03:45.583131: 337 1.928 1.671 0.386 -2.359 2.350 -1.388 0.3622462630 stdout 2017-07-11T15:03:45.583131: 338 1.928 1.671 0.361 -2.359 2.350 -1.388 0.3622460193 stdout 2017-07-11T15:03:46.084432: 343 1.928 1.671 0.352 -2.359 2.350 -1.388 0.3621974330 stdout 2017-07-11T15:03:46.585486: 347 1.928 1.671 0.353 -2.359 2.350 -1.388 0.3621900126 stdout 2017-07-11T15:03:47.086396: 355 1.928 1.671 0.353 -2.243 2.350 -1.388 0.3619120638 stdout 2017-07-11T15:03:47.587405: 361 1.928 1.671 0.353 -2.238 2.350 -1.388 0.3618851313 stdout 2017-07-11T15:03:47.587405: 362 1.928 1.671 0.353 -2.237 2.350 -1.388 0.3618776031 stdout 2017-07-11T15:03:48.088574: 364 1.928 1.671 0.353 -2.236 2.350 -1.388 0.3618702914 stdout 2017-07-11T15:03:48.590168: 371 1.928 1.671 0.353 -2.236 2.275 -1.388 0.3614940073 stdout 2017-07-11T15:03:48.590168: 373 1.928 1.671 0.353 -2.236 2.294 -1.388 0.3614404794 stdout 2017-07-11T15:03:49.091699: 376 1.928 1.671 0.353 -2.236 2.290 -1.388 0.3614299858 stdout 2017-07-11T15:03:50.103861: 387 1.959 1.766 0.435 -2.373 2.397 -1.500 0.3577448052 stdout 2017-07-11T15:03:50.605059: 393 2.115 1.862 0.326 -2.386 2.444 -1.322 0.3526435601 stdout 2017-07-11T15:03:51.106358: 400 2.130 1.871 0.315 -2.387 2.448 -1.305 0.3524606274 stdout 2017-07-11T15:03:51.607550: 402 2.138 1.877 0.309 -2.388 2.451 -1.295 0.3524018201 stdout 2017-07-11T15:03:51.607550: 404 2.136 1.875 0.311 -2.388 2.450 -1.297 0.3523837217 stdout 2017-07-11T15:03:51.607550: 406 2.135 1.875 0.311 -2.388 2.450 -1.298 0.3523682108 stdout 2017-07-11T15:03:52.108999: 407 2.135 1.874 0.312 -2.388 2.450 -1.299 0.3523601679 stdout 2017-07-11T15:03:52.108999: 410 2.135 1.874 0.312 -2.388 2.450 -1.299 0.3523594830 stdout 2017-07-11T15:03:52.610313: powell nthiter 4: fret = 0.352359 stdout 2017-07-11T15:03:52.610313: 417 1.988 1.874 0.312 -2.388 2.450 -1.299 0.3510237967 stdout 2017-07-11T15:03:53.111573: 419 1.966 1.874 0.312 -2.388 2.450 -1.299 0.3509920248 stdout 2017-07-11T15:03:53.111573: 422 1.969 1.874 0.312 -2.388 2.450 -1.299 0.3509917100 stdout 2017-07-11T15:03:53.111573: 423 1.968 1.874 0.312 -2.388 2.450 -1.299 0.3509915887 stdout 2017-07-11T15:03:54.123796: 431 1.976 1.898 0.332 -2.422 2.477 -1.327 0.3506538377 stdout 2017-07-11T15:03:54.123796: 433 1.976 1.899 0.333 -2.423 2.477 -1.328 0.3506455153 stdout 2017-07-11T15:03:54.625117: 441 1.976 1.899 0.311 -2.423 2.477 -1.328 0.3506442940 stdout 2017-07-11T15:03:55.636804: 450 1.976 1.899 0.312 -2.423 2.477 -1.328 0.3506303716 stdout 2017-07-11T15:03:57.159549: 471 1.976 1.899 0.312 -2.423 2.319 -1.328 0.3489390096 stdout 2017-07-11T15:03:57.660935: 472 1.976 1.899 0.312 -2.423 2.316 -1.328 0.3489306622 stdout 2017-07-11T15:03:57.660935: 475 1.976 1.899 0.312 -2.423 2.314 -1.328 0.3489262882 stdout 2017-07-11T15:03:57.660935: 476 1.976 1.899 0.312 -2.423 2.311 -1.328 0.3489215816 stdout 2017-07-11T15:03:57.660935: 477 1.976 1.899 0.312 -2.423 2.309 -1.328 0.3489192851 stdout 2017-07-11T15:03:58.673238: 485 2.005 1.917 0.292 -2.425 2.318 -1.295 0.3487288675 stdout 2017-07-11T15:03:58.673238: 486 2.005 1.917 0.292 -2.425 2.318 -1.295 0.3487231880 stdout 2017-07-11T15:03:58.673238: 487 1.993 1.909 0.301 -2.424 2.314 -1.309 0.3487066436 stdout 2017-07-11T15:03:59.174469: 489 1.998 1.913 0.297 -2.425 2.316 -1.303 0.3486592070 stdout 2017-07-11T15:03:59.174469: 491 1.999 1.913 0.296 -2.425 2.316 -1.301 0.3486412280 stdout 2017-07-11T15:03:59.675837: 494 2.000 1.913 0.296 -2.425 2.316 -1.301 0.3486408031 stdout 2017-07-11T15:03:59.675837: 495 2.000 1.914 0.296 -2.425 2.316 -1.301 0.3486404967 stdout 2017-07-11T15:04:00.687971: powell nthiter 5: fret = 0.348641 stdout 2017-07-11T15:04:00.687971: 504 1.942 1.914 0.296 -2.425 2.316 -1.301 0.3485012327 stdout 2017-07-11T15:04:00.687971: 505 1.958 1.914 0.296 -2.425 2.316 -1.301 0.3484529163 stdout 2017-07-11T15:04:00.687971: 507 1.957 1.914 0.296 -2.425 2.316 -1.301 0.3484521998 stdout 2017-07-11T15:04:00.687971: 509 1.954 1.914 0.296 -2.425 2.316 -1.301 0.3484513453 stdout 2017-07-11T15:04:01.700285: 518 1.967 1.954 0.330 -2.483 2.362 -1.349 0.3477135130 stdout 2017-07-11T15:04:01.700285: 519 1.967 1.955 0.331 -2.484 2.363 -1.349 0.3477018833 stdout 2017-07-11T15:04:02.201505: 522 1.970 1.965 0.340 -2.499 2.374 -1.361 0.3475985765 stdout 2017-07-11T15:04:02.201505: 523 1.970 1.964 0.339 -2.497 2.373 -1.360 0.3475793763 stdout 2017-07-11T15:04:02.201505: 524 1.969 1.962 0.337 -2.494 2.370 -1.357 0.3475208875 stdout 2017-07-11T15:04:03.213562: 535 1.969 1.962 0.363 -2.494 2.370 -1.357 0.3474882987 stdout 2017-07-11T15:04:03.714711: 539 1.969 1.962 0.382 -2.494 2.370 -1.357 0.3474228726 stdout 2017-07-11T15:04:03.714711: 541 1.969 1.962 0.383 -2.494 2.370 -1.357 0.3474208385 stdout 2017-07-11T15:04:03.714711: 543 1.969 1.962 0.385 -2.494 2.370 -1.357 0.3474054683 stdout 2017-07-11T15:04:04.726967: 553 1.969 1.962 0.385 -2.489 2.370 -1.357 0.3473947959 stdout 2017-07-11T15:04:04.726967: 555 1.969 1.962 0.385 -2.487 2.370 -1.357 0.3473904685 stdout 2017-07-11T15:04:05.228171: 556 1.969 1.962 0.385 -2.486 2.370 -1.357 0.3473613856 stdout 2017-07-11T15:04:05.729219: 563 1.969 1.962 0.385 -2.486 2.279 -1.357 0.3469565110 stdout 2017-07-11T15:04:06.230308: 564 1.969 1.962 0.385 -2.486 2.292 -1.357 0.3469283215 stdout 2017-07-11T15:04:06.230308: 565 1.969 1.962 0.385 -2.486 2.299 -1.357 0.3469062956 stdout 2017-07-11T15:04:06.731524: 570 1.969 1.962 0.385 -2.486 2.298 -1.357 0.3469049955 stdout 2017-07-11T15:04:08.254075: 584 1.971 1.962 0.384 -2.486 2.298 -1.355 0.3468935822 stdout 2017-07-11T15:04:08.254075: 585 1.971 1.963 0.384 -2.486 2.298 -1.355 0.3468916654 stdout 2017-07-11T15:04:08.254075: 586 1.972 1.963 0.383 -2.486 2.298 -1.354 0.3468863863 stdout 2017-07-11T15:04:08.755461: 588 1.971 1.963 0.383 -2.486 2.298 -1.355 0.3468829222 stdout 2017-07-11T15:04:09.256646: powell nthiter 6: fret = 0.346883 stdout 2017-07-11T15:04:09.256646: 597 1.926 1.963 0.383 -2.486 2.298 -1.355 0.3468807645 stdout 2017-07-11T15:04:09.256646: 598 1.949 1.963 0.383 -2.486 2.298 -1.355 0.3467669466 stdout 2017-07-11T15:04:09.758193: 600 1.947 1.963 0.383 -2.486 2.298 -1.355 0.3467658612 stdout 2017-07-11T15:04:10.259188: 611 1.946 1.964 0.384 -2.487 2.299 -1.356 0.3467461913 stdout 2017-07-11T15:04:11.270831: 620 1.946 1.964 0.379 -2.487 2.299 -1.356 0.3467353332 stdout 2017-07-11T15:04:12.793721: 637 1.946 1.964 0.379 -2.486 2.299 -1.356 0.3467196423 stdout 2017-07-11T15:04:13.806209: 649 1.946 1.964 0.379 -2.486 2.297 -1.356 0.3467094718 stdout 2017-07-11T15:04:13.806209: 650 1.946 1.964 0.379 -2.486 2.296 -1.356 0.3467057851 stdout 2017-07-11T15:04:17.883532: powell nthiter 7: fret = 0.346706 stdout 2017-07-11T15:04:17.883532: 689 1.946 1.964 0.379 -2.486 2.296 -1.356 0.3467012426 stdout 2017-07-11T15:04:18.384856: 690 1.946 1.965 0.380 -2.487 2.297 -1.357 0.3466969405 stdout 2017-07-11T15:04:21.440063: 726 1.946 1.965 0.380 -2.487 2.296 -1.357 0.3466931170 stdout 2017-07-11T15:04:21.440063: 729 1.946 1.965 0.380 -2.487 2.295 -1.357 0.3466893388 stdout 2017-07-11T15:04:21.440063: 730 1.946 1.965 0.380 -2.487 2.294 -1.357 0.3466857363 stdout 2017-07-11T15:04:22.963277: 745 1.946 1.965 0.380 -2.487 2.294 -1.357 0.3466846795 stdout 2017-07-11T15:04:25.508005: powell nthiter 8: fret = 0.346685 stdout 2017-07-11T15:04:25.508005: 777 1.946 1.965 0.381 -2.487 2.294 -1.357 0.3466813945 stdout 2017-07-11T15:04:27.545484: 806 1.946 1.965 0.381 -2.487 2.293 -1.357 0.3466778642 stdout 2017-07-11T15:04:28.046778: 807 1.946 1.965 0.381 -2.487 2.292 -1.357 0.3466742345 stdout 2017-07-11T15:04:29.058868: 824 1.946 1.965 0.381 -2.487 2.292 -1.357 0.3466718711 stdout 2017-07-11T15:04:29.560068: 828 1.947 1.965 0.381 -2.487 2.290 -1.356 0.3466655473 stdout 2017-07-11T15:04:30.061370: 836 1.947 1.965 0.381 -2.487 2.290 -1.356 0.3466655268 stdout 2017-07-11T15:04:32.606375: powell nthiter 9: fret = 0.346666 stdout 2017-07-11T15:04:32.606375: 863 1.947 1.966 0.382 -2.488 2.291 -1.357 0.3466555393 stdout 2017-07-11T15:04:33.618498: 878 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466526233 stdout 2017-07-11T15:04:37.186345: 908 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466496554 stdout 2017-07-11T15:04:37.687604: 916 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466456797 stdout 2017-07-11T15:04:38.189126: 920 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466450863 stdout 2017-07-11T15:04:38.189126: 921 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466446273 stdout 2017-07-11T15:04:38.189126: 922 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466444174 stdout 2017-07-11T15:04:38.690640: 923 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466442483 stdout 2017-07-11T15:04:38.690640: 924 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466441853 stdout 2017-07-11T15:04:38.690640: 926 1.947 1.966 0.383 -2.488 2.291 -1.357 0.3466441212 stdout 2017-07-11T15:04:46.855767: stdout 2017-07-11T15:04:46.855767: powell nthiter 10: fret = 0.346644 stdout 2017-07-11T15:04:46.855767: 0 -25.0 -25.0 -25.0 1.016081 stdout 2017-07-11T15:04:46.855767: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:46.855767: 0.00178 0.09725 0.99526 -12.74063; stdout 2017-07-11T15:04:46.855767: 0.00760 0.99523 -0.09726 20.34101; stdout 2017-07-11T15:04:46.855767: 0.99997 -0.00774 -0.00103 -0.45013; stdout 2017-07-11T15:04:46.855767: 1 -25.0 -25.0 25.0 1.014264 stdout 2017-07-11T15:04:46.855767: 2 -25.0 25.0 -25.0 1.028482 stdout 2017-07-11T15:04:46.855767: 3 -25.0 25.0 25.0 0.988771 stdout 2017-07-11T15:04:46.855767: 4 25.0 -25.0 -25.0 1.035152 stdout 2017-07-11T15:04:46.855767: 5 25.0 -25.0 25.0 1.000002 stdout 2017-07-11T15:04:46.855767: 6 25.0 25.0 -25.0 1.022572 stdout 2017-07-11T15:04:46.855767: 7 25.0 25.0 25.0 0.989287 stdout 2017-07-11T15:04:46.855767:Computing relative cost stdout 2017-07-11T15:04:46.855767:Cost 0.3466 stdout 2017-07-11T15:04:46.855767:Ctx Intensity 1425.5138 +/- 440.6039 stdout 2017-07-11T15:04:46.855767:Final costs ---------------- stdout 2017-07-11T15:04:46.855767:Min cost was 0.346644 stdout 2017-07-11T15:04:46.855767:Number of FunctionCalls 1016 stdout 2017-07-11T15:04:46.855767:Number of iterations 10 stdout 2017-07-11T15:04:46.855767:Number of surface hits 61377 stdout 2017-07-11T15:04:46.855767:OptimizationTime 91.433000 sec stdout 2017-07-11T15:04:46.855767:Parameters at optimum (rotdeg) -2.48780 2.29058 -1.35681 stdout 2017-07-11T15:04:46.855767:Parameters at optimum (transmm) 1.94681 1.96568 0.38275 stdout 2017-07-11T15:04:46.855767:Pct Contrast 13.7988 +/- 28.4184 stdout 2017-07-11T15:04:46.855767:Powell done niters = 10 stdout 2017-07-11T15:04:46.855767:REL: 8 0.346644 8.094610 1.011826 rel = 0.342593 stdout 2017-07-11T15:04:46.855767:Reg at min cost was stdout 2017-07-11T15:04:46.855767:RelCost 0.6797 stdout 2017-07-11T15:04:46.855767:TolPowell 0.000000 stdout 2017-07-11T15:04:46.855767:WM Intensity 1225.0926 +/- 375.6966 stdout 2017-07-11T15:04:46.855767:Writing optimal reg to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat, type = 14 stdout 2017-07-11T15:04:46.855767:nMaxItersPowell 36 stdout 2017-07-11T15:04:48.382416: stdout 2017-07-11T15:04:48.382416: stdout 2017-07-11T15:04:48.382416: stdout 2017-07-11T15:04:48.382416: stdout 2017-07-11T15:04:48.382416: stdout 2017-07-11T15:04:48.382416: applying LR flip to registration matrix. stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 0.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 0.00000 1.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 1.00000 -128.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 0.00000 1.10000 -15.40001; stdout 2017-07-11T15:04:48.382416: 0.00000 -1.00000 0.00000 128.00000; stdout 2017-07-11T15:04:48.382416: 0.00000 -1.10000 0.00000 66.00001; stdout 2017-07-11T15:04:48.382416: 0.00178 0.09725 0.99526 -12.74063; stdout 2017-07-11T15:04:48.382416: 0.00178 0.09725 0.99526 -12.74063; stdout 2017-07-11T15:04:48.382416: 0.00178 0.09725 0.99526 -12.74063; stdout 2017-07-11T15:04:48.382416: 0.00760 0.99523 -0.09726 20.34101; stdout 2017-07-11T15:04:48.382416: 0.00760 0.99523 -0.09726 20.34101; stdout 2017-07-11T15:04:48.382416: 0.00760 0.99523 -0.09726 20.34101; stdout 2017-07-11T15:04:48.382416: 0.02159 -0.04345 0.00302 -2.86648; stdout 2017-07-11T15:04:48.382416: 0.02337 0.05380 0.99828 -15.60710; stdout 2017-07-11T15:04:48.382416: 0.04101 0.00208 0.04237 -1.13991; stdout 2017-07-11T15:04:48.382416: 0.04861 0.99731 -0.05489 19.20110; stdout 2017-07-11T15:04:48.382416: 0.99854 -0.04981 -0.02069 -2.84409; stdout 2017-07-11T15:04:48.382416: 0.99997 -0.00774 -0.00103 -0.45013; stdout 2017-07-11T15:04:48.382416: 0.99997 -0.00774 -0.00103 -0.45013; stdout 2017-07-11T15:04:48.382416: 0.99997 -0.00774 -0.00103 -0.45013; stdout 2017-07-11T15:04:48.382416:$Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ stdout 2017-07-11T15:04:48.382416:---- Input registration matrix -------- stdout 2017-07-11T15:04:48.382416:---- Input registration matrix -------- stdout 2017-07-11T15:04:48.382416:--------------------------------------- stdout 2017-07-11T15:04:48.382416:-0.00143 -0.04207 -0.01966 -2.39396; stdout 2017-07-11T15:04:48.382416:-1.00000 0.00000 0.00000 128.00000; stdout 2017-07-11T15:04:48.382416:-1.10000 0.00000 0.00000 65.99999; stdout 2017-07-11T15:04:48.382416:BBR-Run-Time-Sec 118 stdout 2017-07-11T15:04:48.382416:Cleaning up stdout 2017-07-11T15:04:48.382416:Computing change in lh position stdout 2017-07-11T15:04:48.382416:Computing change in rh position stdout 2017-07-11T15:04:48.382416:Determinant -1 stdout 2017-07-11T15:04:48.382416:Diagnostic Level -1 stdout 2017-07-11T15:04:48.382416:Ended at Tue Jul 11 15:04:48 CEST 2017 stdout 2017-07-11T15:04:48.382416:FSLOUTPUTTYPE NIFTI_GZ stdout 2017-07-11T15:04:48.382416:INFO: FSL2FreeSurfer: Mov volume is NIFTI with positive det, stdout 2017-07-11T15:04:48.382416:INFO: loading movable /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii stdout 2017-07-11T15:04:48.382416:INFO: loading target /data/pt_nmc002/TDMGB_FMRI_ReconAll//sub-01/mri/orig.mgz stdout 2017-07-11T15:04:48.382416:INFO: no target volume specified, assuming FreeSurfer orig volume. stdout 2017-07-11T15:04:48.382416:LH rmsDiffMean 4.107502 stdout 2017-07-11T15:04:48.382416:LoadVol 0 stdout 2017-07-11T15:04:48.382416:MinCost: 0.346644 1225.092569 1425.513802 13.798760 stdout 2017-07-11T15:04:48.382416:Original Reg stdout 2017-07-11T15:04:48.382416:Original Reg - Optimal Reg stdout 2017-07-11T15:04:48.382416:RegMat --------------------------- stdout 2017-07-11T15:04:48.382416:Started at Tue Jul 11 15:02:50 CEST 2017 stdout 2017-07-11T15:04:48.382416:Surface-RMS-Diff-mm 3.860818 2.022817 8.555106 stdout 2017-07-11T15:04:48.382416:Tmov: -------------------- stdout 2017-07-11T15:04:48.382416:To check results, run: stdout 2017-07-11T15:04:48.382416:Ttarg: -------------------- stdout 2017-07-11T15:04:48.382416:Writing output volume to /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg.nii stdout 2017-07-11T15:04:48.382416:ZeroCRAS 0 stdout 2017-07-11T15:04:48.382416:bbregister Done stdout 2017-07-11T15:04:48.382416:float2int = 0 stdout 2017-07-11T15:04:48.382416:mkheaderreg = 0, float2int = 0 stdout 2017-07-11T15:04:48.382416:movable volume /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii stdout 2017-07-11T15:04:48.382416:mri_segreg done stdout 2017-07-11T15:04:48.382416:reg file /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat stdout 2017-07-11T15:04:48.382416:subject = sub-01 stdout 2017-07-11T15:04:48.382416:target volume orig stdout 2017-07-11T15:04:48.382416:tkreg2FSL: mov det = 1.331, ref det = -1 stdout 2017-07-11T15:04:48.382416:tkregister2_cmdl --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --noedit --fslregout /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.mat stdout 2017-07-11T15:04:48.382416:tkregister_tcl /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools/tkregister2.tcl stdout 2017-07-11T15:04:48.382416:tkregisterfv --mov /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold.nii --reg /data/pt_nmc002/TDMGB_FMRI_coreg/tmp/preproc/_subject_id_sub-01/_init_header/bbreg/mapflow/_bbreg0/meanusub-01_task-spespk_run-01_bold_bbreg_sub-01.dat --surfs Environment ~~~~~~~~~~~ * ANTSPATH : /afs/cbs.mpg.de/software/ants/2.1.0-rc3/ubuntu-xenial-amd64/antsbin/bin * C3DPATH : /afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64 * DISPLAY : :1 * ENVLIST : fsl=5.0.9:ants=2.1.0-rc3:c3d=1.0.0-2014-09-19:freesurfer=6.0.0 * FB_COLORIZE : 0 * FIX_VERTEX_AREA : * FMRI_ANALYSIS_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsfast * FREESURFER_HOME : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64 * FSFAST_HOME : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsfast * FSF_OUTPUT_FORMAT : nii.gz * FSLBROWSER : /etc/alternatives/x-www-browser * FSLCONVERT : /usr/bin/convert * FSLDIR : /usr/share/fsl/5.0 * FSLDISPLAY : /usr/bin/display * FSLLOCKDIR : * FSLMACHINELIST : * FSLMULTIFILEQUIT : TRUE * FSLOUTPUTTYPE : NIFTI_GZ * FSLREMOTECALL : * FSLTCLSH : /usr/bin/tclsh * FSLWISH : /usr/bin/wish * FSL_BIN : /afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/share/bin * FSL_DIR : /afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/share * FS_OVERRIDE : 0 * FUNCTIONALS_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/sessions * HISTCONTROL : ignoreboth * HISTSIZE : 50000 * HOME : /home/raid2/mihai * KRB5CCNAME : FILE:/tmp/krb5cc_12560_xfhVv5we1e * LANG : en_US.UTF-8 * LC_ALL : en_US.UTF-8 * LD_LIBRARY_PATH : /usr/lib/fsl/5.0:/afs/cbs.mpg.de/software/lib/zlib1g/ubuntu-xenial-amd64:/afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64/lib/c3d_gui-1.0.0:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsl/lib * LOCALPROFILE : cbs-fb * LOCAL_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/local * LOGNAME : mihai * MAIL : /var/mail/mihai * MANPAGER : /usr/bin/less * MATLABPATH : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival/mass_univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival/univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/Survival/ex_data:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/mass_univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/univariate:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/Qdec:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/matlab/lme/geodesic * MINC_BIN_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/bin * MINC_LIB_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/lib * MNI_DATAPATH : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/data * MNI_DIR : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni * MNI_PERL5LIB : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/share/perl5 * MOZ_PLUGIN_PATH : /afs/cbs.mpg.de/service/browserplugins/ubuntu-xenial-amd64 * OS : Linux * PAGER : /usr/bin/less * PATH : /nobackup/alster2/Glad/anaconda2_serverwide/bin:/afs/cbs.mpg.de/software/fsl/currentversion.ubuntu-xenial-amd64/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/fsfast/bin:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/tktools:/afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/share/bin:/usr/lib/fsl/5.0:/afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/bin:/afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/convert3d/1.0.0-2014-09-19/ubuntu-xenial-amd64/lib/c3d_gui-1.0.0:/afs/cbs.mpg.de/software/ants/2.1.0-rc3/ubuntu-xenial-amd64/antsbin/bin:/afs/cbs.mpg.de/software/fsl/5.0.9/ubuntu-xenial-amd64/bin:/afs/cbs.mpg.de/software/fsl/currentversion.ubuntu-xenial-amd64/ubuntu-xenial-amd64/bin:/bin:/sbin:/opt/bin:/usr/bin:/usr/sbin:/afs/cbs.mpg.de/software/scripts:/afs/cbs.mpg.de/software/scripts/science:/afs/cbs.mpg.de/software/bin/linux:/usr/games:/home/raid2/mihai/Software/doublecmd/:/home/raid2/mihai/Software/pycharm-community-2016.1.2/bin/:~/Software/scripts/:/home/raid2/mihai/Software/doublecmd/:/home/raid2/mihai/Software/pycharm-community-2016.1.2/bin/:~/Software/scripts/ * PERL5LIB : /afs/cbs.mpg.de/software/freesurfer/6.0.0/ubuntu-xenial-amd64/mni/share/perl5:/afs/cbs.mpg.de/software/perllib * POSSUMDIR : /usr/share/fsl/5.0 * PS1 : freesurfer=6.0.0_\u@\h:\w > * PWD : /nobackup/alster2/Glad/Projects/Top-down_mod_MGB/Experiments/TdMGB_fMRI/DATA/code/analysis_pipeline_nypipe * SHELL : /bin/bash * SHINTERACTIVE : 1 * SHLVL : 2 * SHTERM : 1 * SLCLUSTER_MAILOPTS : n * SSH_CLIENT : 10.0.65.235 38484 22 * SSH_CONNECTION : 10.0.65.235 38484 10.0.67.44 22 * SSH_TTY : /dev/pts/28 * SUBJECTS_DIR : /data/pt_nmc002/TDMGB_FMRI_ReconAll/ * TERM : xterm * USER : mihai * XDG_SESSION_COOKIE : c99354996f68442e9411a0dd1403234c-1499774136.404650-1832849722 * _ : /nobackup/alster2/Glad/anaconda2_serverwide/bin/python