Hello, Bruce,

Thanks a lot!
But which commands I can use to convert our atlas to the .gca format?

Guang

> Date: Thu, 3 Dec 2009 07:25:29 -0500
> From: fischl@nmr.mgh.harvard.edu
> To: freesurfer_zg@hotmail.com
> CC: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] how to convert our own atlas to freesurfer
>
> oh, then you would just replace the .gca file in mri_em_register,
> mri_ca_register, mri_ca_label and mri_ca_normalize
>
> cheers
> Bruce
>
> On Thu, 3 Dec 2009, Guang
> Zeng wrote:
>
> >
> > Hello, Bruce,
> >
> > It is a subcortical structure atlas based on 100 subjects.
> >
> >
> > Thanks a lot!
> > Guang
> >
> >> Date: Wed, 2 Dec 2009 18:32:01 -0500
> >> From: fischl@nmr.mgh.harvard.edu
> >> To: freesurfer_zg@hotmail.com
> >> CC: freesurfer@nmr.mgh.harvard.edu
> >> Subject: Re: [Freesurfer] how to convert our own atlas to freesurfer
> >>
> >> what kind of atlas?
> >> On Wed, 2 Dec 2009, Guang Zeng wrote:
> >>
> >>>
> >>> Hello, there,
> >>>
> >>> We have a manualled labeled atlas, it is saved in a .nii file.
> >>> We'd liek to use this atlas instead of FS's default atlas. If there are any commands or fucntions in FS can help us to do it.
> >>>
> >>> Thanks a lot!
> >>> Guang
> >>>
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