Hi Eugeno,

I am hitting the same error as described in this post, but using a Dev El Capitan version.

Here is my error output:

[arkadiysnewimac:Freesurfer/Freesurfer_Files_with_Freesurfer_Masks/Post_Manual_Edits] arkadiy% segmentHA_T1.sh SILVA053

#--------------------------------------------

#@# Hippocampal Subfields processing (T1) left Thu Jan 25 17:26:21 EST 2018

------------------------------------------

Setting up environment variables

---

DYLD_LIBRARY_PATH is .:/Applications/freesurfer_Dev_El_Capitan/MCRv84//runtime/maci64:/Applications/freesurfer_Dev_El_Capitan/MCRv84//bin/maci64:/Applications/freesurfer_Dev_El_Capitan/MCRv84//sys/os/maci64:

Invalid MEX-file '/tmp/MCR_2426959059/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64': dlopen(/tmp/MCR_2426959059/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64, 6): Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv

  Referenced from: /tmp/MCR_2426959059/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64

  Expected in: /usr/lib/libstdc++.6.0.9.dylib

in /tmp/MCR_2426959059/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64

Error in kvlClear (line 11)

Error in segmentSubjectT1_autoEstimateAlveusML (line 115)

MATLAB:invalidMEXFile

Darwin arkadiysnewimac.mclean.harvard.edu 17.3.0 Darwin Kernel Version 17.3.0: Thu Nov  9 18:09:22 PST 2017; root:xnu-4570.31.3~1/RELEASE_X86_64 x86_64

T1 hippocampal subfields exited with ERRORS at Thu Jan 25 17:26:27 EST 2018

Wondering if you might have resolved this already?

Thank you for all of your help,

Arkadiy

-- 

Arkadiy L. Maksimovskiy, Ph.D.

Postdoctoral Research Fellow
McLean Imaging Center, McLean Hospital
Department of Psychiatry, Harvard Medical School