Thank you for your help! The process took 22 hours, but it completed without errors! Now I will start looking at the output to analyze.

I was wondering if it is possible to run 3-4 of the freesurfer processes like recon-all simultaneously? I will be running these on a Mac with 8 Ghz of Memory and a 2.66 GHz processor - is that sufficient hardware capability to run several simultaneous processes?

Thanks again!
Ankita

On Sun, Jan 24, 2016 at 6:41 AM Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

nope, keep waiting. Depending on your hardware and how different the
anatomy is from normal it can take up to a day.

as for LGI, check recon-all -help
cheers
Bruce
On Sun, 24 Jan 2016, Ankita
Chatterjee wrote:

> I ran the command recon-all -all -s t2 -i t1xxxxx.mnc as Bruce suggested and
> the process took off but has been running for more than 6 hours and seems to
> be not doing anything after the step which reads MRISunfold() max_passes = 1
> -----------it has a few steps after that, but doesn't say that it completed.
> The last line reads -
> randomSeed 1234. Is it hung? Should I exit the program?
>
> Thank you for your help!
> Ankita
>
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