External Email - Use Caution

Sure.This is the full terminal output:

root@zourushi-All-Series:/usr/local/freesurfer/subjects/PT1_4# mri_label2label --srclabel label/4gt.label --s PT1_4 --trglabel 4gtreg.label --hemi rh --paint 30 pial --trgsurf pial

Could not set locale

No such file or directory

Could not set locale

srclabel = label/4gt.label

srcsubject = PT1_4

trgsubject = PT1_4

trglabel = 4gtreg.label

regmethod = surface

srchemi = rh

trghemi = rh

trgsurface = pial

srcsurfreg = sphere.reg

trgsurfreg = sphere.reg

usehash = 1

Use ProjAbs = 0, 0

Use ProjFrac = 0, 0

DoPaint 1

PaintMax 30.000000

SUBJECTS_DIR /usr/local/freesurfer/subjects

FREESURFER_HOME /usr/local/freesurfer

Loading source label.

Found 59455 points in source label.

Starting surface-based mapping

Reading source registration

/usr/local/freesurfer/subjects/PT1_4/surf/rh.sphere.reg

59455 unassigned vertices in label - building spatial LUT...

assigning vertex numbers to label...

/usr/local/freesurfer/bin/mri_label2label: line 3: 4446 Segmentation fault (core dumped) mri_label2label.bin "$@"

------------------ 原始邮件 ------------------

发件人: "Greve, Douglas N.,Ph.D."<DGREVE@mgh.harvard.edu>;

发送时间: 2019年3月13日(星期三) 凌晨0:06

收件人: "freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>;

主题: Re: [Freesurfer] Error with mri_label2label(Segmentation fault(coredumped))

Can you send the full terminal output?

On 3/12/19 10:36 AM, 310913949 wrote:

External Email - Use Caution

Hi Bruce,

I drawed a 3D ROI on the original image using freeview,and saved it as an label file. Then I wanted to sample it to my subject and to found the closest surface vertices so that I can extract the cortical thickness of ROI. I used the command line: mri_label2label --srclabel 4gt.label --s PT1_4 --trglabel 4reg.on-pial.label --hemi rh --paint 30 pial --trgsurf pial. But it reported error: Line 3:4445 Segmentation fault(core dumped), mri_label2label.bin "$@".

Can you tell me how to solve this problem?Is it wrong to use the mri_label2label?

Thanks.

Best wishes，

Kan Deng
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer