FS experts,
The aim of this mail is about some errors I had encountered when I try to generate a table from some *.stats files obtained after a longitudinal analysis.
After running the command :
long_stats_slopes --qdec ./qdec/longi_presentacio.qdec.table.dat --stats aseg.stats --meas volume --do-avg --do-rate --do-pc1 --time years
(with no errors during the execution), I would like to extract and put together all the longitudinal aseg.stats files of rate and/or pc1 of my subjects.
I had tried to run the command
asegstats2table --subjects $subjectes_table --statsfile=long.aseg.stats.volume-rate.dat --meas volume --tablefile aseg_stats_longi.txt
where $subjects is the list of subjects I want to focus.
However, an error appears after running this command:
Parsing the .stats files
Traceback (most recent call last):
File "/usr/local/freesurfer/bin/asegstats2table", line 494, in <module>
id_name_map, measurelist = parsed.parse(options.meas)
File "/usr/local/freesurfer/bin/fsutils.py", line 117, in parse
self.measurelist.append( float(strlst[self.measure_column_map[measure]] ))
ValueError: could not convert string to float: Left-Cerebellum-White-Matter
I do not know if the problem is genereted on the long_stats_slopes command or during the asegstat2table execution.
Thanks in advance for your attencion and help!
Bests,
Victor