Dear FreeSurfer developers,
I cannot seem to get "mri_segment_hypothalamic_subunits" to work using the virtualbox installation of FS-7.2.0.
I have a subject that ran to completion using recon-all, but when I tried to obtain the additional segmentation I keep getting "Illegal instruction (core dumped)".
I have tried several permutations of the command (see below)
(I did not include some of the extended syntax permutations (--sd, etc) in the list below, but I did try several - -> Illegal etc)
It occurred to me that I should just attempt to see if the "help" command would work, so I simply copied the syntax directly from the wiki page
mri_segment_hypothalamic_subunits -h
... and as you can see below, that also returned "Illegal instruction (core dumped)".
I even tried a direct copy of the syntax for "bert". No joy.
Is this module actually implemented in the VM?
Are there any suggestions regarding syntax, where the command is executed, etc.?
Thanks in advance for any help you can offer.
-Randy
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
developer@developer-VirtualBox:/$ ls
bin dev initrd.img lib64 mnt root snap sys var
boot etc initrd.img.old lost+found opt run srv tmp vmlinuz
cdrom home lib media proc sbin swapfile usr vmlinuz.old
developer@developer-VirtualBox:/$ mri_segment_hypothalamic_subunits --s WBI-FES_S_0862 --write_posteriors
Illegal instruction (core dumped)
developer@developer-VirtualBox:/$ pwd
/
developer@developer-VirtualBox:/$ cd /usr/local/freesurfer/7.2.0/subjects/
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$ mri_segment_hypothalamic_subunits --s bert
Illegal instruction (core dumped)
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$ mri_segment_hypothalamic_subunits --h
Illegal instruction (core dumped)
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$ mri_segment_hypothalamic_subunits --help
Illegal instruction (core dumped)
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$ mri_segment_hypothalamic_subunits -help
Illegal instruction (core dumped)
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$ mri_segment_hypothalamic_subunits -h
Illegal instruction (core dumped)
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$ mri_segment_hypothalamic_subunits --s WBI-WCM_S_0862 --write_posteriors --crop 1000
Illegal instruction (core dumped)
developer@developer-VirtualBox:/usr/local/freesurfer/7.2.0/subjects$
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
-------- freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /usr/local/freesurfer/7.2.0
FSFAST_HOME /usr/local/freesurfer/7.2.0/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /usr/local/freesurfer/7.2.0/subjects
MNI_DIR /usr/local/freesurfer/7.2.0/mni
developer@developer-VirtualBox:~$