Hi Michele - Do you get any other output on the screen? Can you attach your configuration file and trac-all.log? Thanks!

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Michele Valotti <michele.valotti@gmail.com>
Sent: Friday, October 30, 2020 12:44 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Tracula error

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Hello all,

I am trying to run Tracula for one of my subjects and after creating the configuration file I run trac-all -prep -c /path/to/config/file

but I am getting this error:

FSLDIR: Undefined variable.

I have run the SetUpFreeSurfer.sh script and echo $FSLDIR prints my fls directory. Adding export FSLDIR=/my/fls/path also does not fix the error,

Any suggestions?

Thank you very much,

Michele