-------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer FSFAST_HOME /Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Users/acad1215inv/Desktop/ALBERTO/03_FreeSurfer_EM MNI_DIR /Applications/freesurfer/mni FSL_DIR /usr/local/fsl - Logfile is /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/log/fcseed-sess.L_CA1.dat.log.con_algon sábado, 16 de abril de 2016, 05:22:55 CEST Darwin acad1215inv.uji.es 14.5.0 Darwin Kernel Version 14.5.0: Wed Jul 29 02:26:53 PDT 2015; root:xnu-2782.40.9~1/RELEASE_X86_64 x86_64 setenv SUBJECTS_DIR /Users/acad1215inv/Desktop/ALBERTO/03_FreeSurfer_EM cd /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting /Applications/freesurfer/fsfast/bin/fcseed-sess -s con_algon -cfg mean.L_CA1.config freesurfer-Darwin-lion-stable-pub-v5.3.0 sábado, 16 de abril de 2016, 05:22:55 CEST Darwin acad1215inv.uji.es 14.5.0 Darwin Kernel Version 14.5.0: Wed Jul 29 02:26:53 PDT 2015; root:xnu-2782.40.9~1/RELEASE_X86_64 x86_64 setenv SUBJECTS_DIR /Users/acad1215inv/Desktop/ALBERTO/03_FreeSurfer_EM cd /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting /Applications/freesurfer/fsfast/bin/fcseed-sess -s con_algon -cfg mean.L_CA1.config freesurfer-Darwin-lion-stable-pub-v5.3.0 mri_label2vol --seg /Users/acad1215inv/Desktop/ALBERTO/03_FreeSurfer_EM/con_algon/mri/aparc+aseg.mgz --reg /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/register.dof6.dat --temp /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/template.nii.gz --fillthresh .5 --o /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/seg.nii.gz --pvf /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/pvf.nii.gz PVF /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/pvf.nii.gz Number of labels: 0 Annot File: (null) Template Volume: /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/template.nii.gz Outut Volume: /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/seg.nii.gz Registration File: /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/register.dof6.dat Fill Threshold: 0.5 Label Vox Vol: 1 ProjType: (null) ProjTypeId: 0 ProjStart: 0 ProjStop: 0 ProjDelta: 0.1 Subject: (null) Hemi: (null) UseNewASeg2Vol: 1 DoLabelStatVol 0 LabelCodeOffset 0 setenv SUBJECTS_DIR /Users/acad1215inv/Desktop/ALBERTO/03_FreeSurfer_EM $Id: mri_label2vol.c,v 1.34.2.5 2012/06/08 17:31:03 greve Exp $ Template RAS-to-Vox: -------- -0.286 0.000 0.000 32.000; -0.000 -0.000 -0.286 32.000; -0.000 0.248 -0.000 15.000; 0.000 0.000 0.000 1.000; Template Voxel Volume: 49.3063 nHits Thresh: 24.6531 Loading registration from /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/register.dof6.dat RegMat: -------- 0.999 -0.051 0.001 0.800; -0.005 -0.073 0.997 -38.876; 0.051 0.996 0.073 4.977; 0.000 0.000 0.000 1.000; Label RAS-to-Vox: -------- -0.285 0.015 -0.000 31.771; -0.015 -0.285 -0.021 30.578; -0.001 -0.018 0.248 5.341; 0.000 0.000 0.000 1.000; ASeg2Vol: Building LUT ASeg2Vol: Sorting ASeg2Vol: Mapping ASeg2Vol: Reverse Map nmisses = 0 (0 filled) ASeg2Vol: done PVF /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/pvf.nii.gz Computing PVF 49.3063 mri_binarize --i /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/seg.nii.gz --o /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/mask.nii.gz --match 552 $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting cmdline mri_binarize --i /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/seg.nii.gz --o /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/mask.nii.gz --match 552 sysname Darwin hostname acad1215inv.uji.es machine x86_64 user acad1215inv input /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/seg.nii.gz frame 0 nErode3d 0 nErode2d 0 output /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/mask.nii.gz Binarizing based on matching values nMatch 1 0 552 binval 1 binvalnot 0 Found 0 values in range Counting number of voxels Found 0 voxels in final mask mri_binarize done mri_segstats --i /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/fmcpr.nii.gz --seg /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/mask.nii.gz --id 1 --sum /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/junk.sum --avgwfvol /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/avgwf.mgh $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --i /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/fmcpr.nii.gz --seg /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/mask.nii.gz --id 1 --sum /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/junk.sum --avgwfvol /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/avgwf.mgh sysname Darwin hostname acad1215inv.uji.es machine x86_64 user acad1215inv UseRobust 0 Loading /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/mask.nii.gz Loading /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/fmcpr.nii.gz Voxel Volume is 49.3063 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 0 0.000 MRIalloc(0, 1, 1): bad parm Reporting on 0 segmentations Computing spatial average of each frame Writing to /Users/acad1215inv/Desktop/ALBERTO/08_Conectividad/CONECTIVIDAD/02_resting/con_algon/rest/009/tmp.fcseed-sess.89262/avgwf.mgh Segmentation fault