Yes, they do. You can edit the aseg.mgz and rerun. You probably only need to re-run the segstats part of the recon.

abel cruz vadell wrote:
Hello

I’m doing a thalamus volumetric analysis between two
populations and checking the thalamus segmentation I
found some pixels classified as white matter
hipointensities inside the thalamus. Do they affect
the volume measure of this structure reported by
FreeSurfer. In the positive case, how can I fix that
problem?
I attached an image.

Thanks

Abel



      ______________________________________________ 
Enviado desde Correo Yahoo! La bandeja de entrada más inteligente.




_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting