# FreeSurfer SUBJECTS_DIR
# T1 images and FreeSurfer segmentations are expected to be found here
# 
setenv SUBJECTS_DIR=/scratch/lm618/Tracula/T1/13655

# Output directory where trac-all results will be saved
# Default: Same as SUBJECTS_DIR
#
set dtroot = /scratch/lm618/Tracula/output

# Subject IDs
#
set subjlist = (13655)

# Input diffusion DICOMs (file names relative to dcmroot)
# If original DICOMs don't exist, these can be in other image format
# but then bvecfile and bvalfile must be specified (see below)
#
set dcmroot = /scratch/lm618/Tracula/DTI/13655
set dcmlist = (13655_0015_00001.dcm)