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Hi again, John,
The amygdala segmentation only because available in development versions newer than FreeSurfer 6.0.
Please try again with the latest dev. You don’t need to re-run recon-all; you can run the hippo+amygdala volume on subjects processed with 6.0.
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Papatriantafyllou <epiktitos@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, 30 September 2018 at 22:15
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] cannot stat volumesAmygdala.txt
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Hi
it is
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
John
On Sun, Sep 30, 2018 at 2:50 PM Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.uk> wrote:
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Hi Jon,
What exact version are you using? Is it a recent development version?
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
ERC Senior Research Fellow
Centre for Medical Image Computing (CMIC)
University College London
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Papatriantafyllou <epiktitos@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, 30 September 2018 at 09:29
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] cannot stat volumesAmygdala.txt
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dear Freesurfers,
after processing hippocampal subfields i cannot get amygdala stats.
Instead i get the following massage
cannot stat volumesAmygdala.txt
Any suggestions?
John
PS i run freesurfer under neurodebian system on pc with windows 10
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