Dear FreeSurfer Developers,

I ran -recon-all -all on my subjects with the aim of examining the gray volumes of the ex vivo entorhinal and perirhinal cortex. Prior to extracting the gray volume numbers of the entorhinal and perirhinal cortex from ?h.BA_exvivo.thresh.stats file, I was examining the entorhinal and perirhinal cortex on the ?h.BA.thresh.annot on Freeview. However, I noted that their locations on the annot file did not correspond to the locations indicated by ?h.entorhinal.thresh.label and ?h.perirhinal.thresh.label. 

I have also loaded the annot files and label files from the fully recon-ed subject named "bert" on Freeview and observed the same mismatch in the labeling. I am curious why this might be the case.

For your reference, I have uploaded a few screenshots from Freeview, on "bert", to demonstrate the label names in the annot file, both with and without the outline of the label files. 

I have searched the archive and have not been able to find any similar queries on this, hence it would be of tremendous help if someone could clarify this observation. If it is of interest, I am running freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0 on Ubuntu 16.04.

Thank you for your assistance and I look forward to hearing from you.

Best regards,