Hi James,

Can you send the full recon-all.log for this subject?

Thanks,

Andrew

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of James Hartzell <james.hartzell@gmail.com>
Reply-To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, September 3, 2020 at 10:20 AM
To: FS Help <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] autorecon2, error MRISreadCurvature:

        External Email - Use Caution        

Hi

When running recon-all autorecon2, on a single subject with

(Macbook Pro 10.15.6 (19G2021), freesurfer-darwin-macOS-7.1.0-20200511-813297b)

it handles the rh.curv without a problem, but for the lh kicks out this error:

/Users...$subj.../surf
\n mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm $subj lh curv sulc \n
             Toggling save flag on curvature files                       [ ok ]
                 Outputting results using filestem   [ ../stats/lh.curv.stats ]
             Toggling save flag on curvature files                       [ ok ]
                                   Setting surface [ $subj./lh.smoothwm ]
                                Reading surface...                       [ ok ]
                                   Setting texture                     [ curv ]
                                Reading texture...error: No such file or directory
error: MRISreadCurvature: could not open /Users/$subj./surf/lh.curv

***WARNING!***
Some error has occurred while reading 'lh.curv'.
This might be due a vertex incompatibility
between the surface 'lh.smoothwm' and curv 'lh.curv'.

You might be able to correct this by re-running
'mris_make_surfaces' on this dataset.

Skipping this (and any remaining) curvature files.
Any measurements / calcuations that depend on the
curvature file will be skipped.
*************

Note /Users/$subj./surf/lh.curv does exist in the subject's surf folder.

I ran it twice just to be sure. I don't find an answer for the problem in the freesurfer list.  Any guidance will be much appreciated!

Cheers

James Hartzell, PhD ^(2x)

Donostia-San Sebatián, Spain