FWIW, we’ve had good success with including the T2w scan as part of the FS 5.3-HCP release.

cheers,
-MH

-- 
Michael Harms, Ph.D.
-----------------------------------------------------------
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO  63110 Email: mharms@wustl.edu

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Krieger, Donald N." <kriegerd@upmc.edu>
Reply-To: 'Freesurfer support list' <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, August 30, 2016 at 9:25 AM
To: 'Freesurfer support list' <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] inclusion of both T1 and T2 in a recon-all run

Thank you – very helpful.

 

Best – Don

 

From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: Tuesday, August 30, 2016 10:23 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] inclusion of both T1 and T2 in a recon-all run

 

ps. The 5.3 version is pretty buggy, so I'd wait until 6.0 to test it out

 

On 8/30/16 10:12 AM, Krieger, Donald N. wrote:

Dear list:

 

What are the advantages of including a T2 scan when running recon-all –all  ?

Which results can it effect and to what extent?

And how sensitive is freesurfer to artifacts in the T2 scan?

Is there a good reference for this/

 

Thanks and best - Don

 




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