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Hello Freesurfer community,

I was wondering if you could look at the e-mail below. Thank you!

Alina

Anfang der weitergeleiteten Nachricht:

Von: Alina Rojas <alinacolora@gmail.com>

Betreff: One hemisphere recon-all ERROR

Datum: 13. Juli 2020 um 15:25:18 MESZ

An: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>

Hello Freesurfer community,

I'm attempting to compare the cortical thickness of one side of the brain between stroke subjects. I got "ERROR: you must include rh white and pial surfaces“. I used  recon-all -sd ${TARGET_FOLDER} -subjid $SUBJECTID -i $T1 -T2 $T2 -qcache -all -3T -T2pial -lh. I attached the recon-all.log file. Ist it a way to get the aparc?

Thank you for your help,

Alina Rojas