Are you trying to run this from outside of recon-all? If not, can you send the recon-all log file? Also, have you looked at the talairach registration?

On 8/15/2022 7:50 AM, 丁晴 wrote:

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Hello FreeSurfer Developers,


I'm attempting to generate filled.mgz using the mri_fill -a */ponscc.cut.log -xform  */talairach.lta -segementation aseg.auto_noCCseg.mgz wm.mgz filled.mgz

Error : *** Error in `mri_fill': double free or corruption (!prev): 0x00000000014aab70 ***

And before the error: 

INFO: Using /home/qding/FBIP/pipeline/KM_test/2//KM002/mri/transforms/talairach.lta and its offset for Talairach volume ...
using segmentation /home/qding/FBIP/pipeline/KM_test/2//KM002/mri/aseg.auto_noCCseg.mgz...
reading input volume...done.
searching for cutting planes...voxel to talairach voxel transform
 1.26345  -0.00883   0.01215  -37.76160;
 0.05445   1.62947   0.37797  -140.90414;
-0.00773  -0.25421   1.23906  -2.18153;
 0.00000   0.00000   0.00000   1.00000;
reading segmented volume /home/qding/FBIP/pipeline/KM_test/2//KM002/mri/aseg.auto_noCCseg.mgz
voxel to talairach voxel transform
 1.26345  -0.00883   0.01215  -37.76160;
 0.05445   1.62947   0.37797  -140.90414;
-0.00773  -0.25421   1.23906  -2.18153;
 0.00000   0.00000   0.00000   1.00000;
segmentation indicates cc at (125,  108,  153) --> (3.0, 25.0, 20.0)
Looking for area (min, max) = (350, 1400)
area[0] = 2589 (min = 350, max = 1400), aspect = 1.11 (min = 0.10, max = 0.75)
need search nearby
using seed (125, 108, 153), TAL = (3.0, 25.0, 20.0)

The details of bug is attached in the attachment.

The data come from a macaque.But I can use ""mri_fill" with -CV -PV to generate filled.mgz

I've searched the list and no similar error have been reported.

Looking forward to your reply. 


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