I sent a question earlier on but I do don’t think I was clearer the first time.
I am trying to do a distortion correction using (epidewarp.fsl)
epidewarp.fsl \
--mag mag.nii.gz \
--dph dphase.nii.gz \
--tediff YOUR_TE_DIFF --esp YOUR_ESP \
--vsm bold/b0dcmap.nii.gz
The issue we collected two field maps one in the AP direction and one in the PA direction (hence I have two different mag and phase volumes). I am not quite sure how if I should create two different
maps and keep them in my bold folder for my FSFAST pipeline