Dear FreeSurfer Experts,

I am Tien Pham, I am stucked at this situation. I calculated longitudinal LGI changes in my data set with two time points using longitudinal pipeline. Now I would like to extract the regional LGI and gray matter volume in my longitudinal results using QDEC to draw the ROIs which is showed significant differences, label it and map to all subjects. Then I get the LGI value of the ROI I saved before using the command below:

cd $SUBJECTS_DIR
mris_anatomical_stats -l lh.untitled.label \
-t lh.pial_lgi \
-b \

-f subject_id/stats/lh.untitled.stats subject_id lh

And this is the result:

[toyama-no-iMac:/applications/freesurfer/subjects] toyama% mris_anatomical_stats -l lh.frontoinsula.label \

? -t lh.pial_lgi \

? -b \

? -f VC019_1/stats/lh.frontoinsula.stats VC019_1 lh

limiting computations to label lh.frontoinsula.label.

using thickness file lh.pial_lgi.

reading volume /applications/freesurfer/subjects/VC019_1/mri/wm.mgz...

reading input surface /applications/freesurfer/subjects/VC019_1/surf/lh.white...

reading input pial surface /applications/freesurfer/subjects/VC019_1/surf/lh.pial...

reading input white surface /applications/freesurfer/subjects/VC019_1/surf/lh.white...

table columns are:

number of vertices

total surface area (mm^2)

total gray matter volume (mm^3)

average cortical thickness +- standard deviation (mm)

integrated rectified mean curvature

integrated rectified Gaussian curvature

folding index

intrinsic curvature index

structure name

6595 4368 15935 3.311 0.895 0.158 0.077 135 19.7 lh.frontoinsula.label

As I saw there was no columns showing the LGI value, I did similar with gray matter volume, the result displayed the different in some values of the columns.
Could you please help me to explain about this?

Thank you very much.

Best regards,

Tien Pham