Logfile for bbregister
Tue Oct 10 10:25:38 EDT 2023

setenv SUBJECTS_DIR /home/dylan/Documents/TRACULA/INPUTS/BIDS/derivatives/freesurfer
cd /opt/freesurfer-7.2.0/subjects
/opt/freesurfer-7.2.0/bin/bbregister --s sub-01 --init-fsl --dti --6 --mov /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/lowb.nii.gz --reg /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/diff2anatorig.bbr.lta

bbregister 7.2.0
Linux dylan-virtual-machine 6.2.0-32-generic #32~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Aug 18 10:40:13 UTC 2 x86_64 GNU/Linux
FREESURFER_HOME /opt/freesurfer-7.2.0
mri_convert /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/lowb.nii.gz /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/template.nii
mri_convert /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/lowb.nii.gz /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/template.nii 
reading from /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/lowb.nii.gz...
TR=6525.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999127, 0.0416454, -0.00341054)
j_ras = (0.0415005, 0.998523, 0.0350694)
k_ras = (-0.00486598, -0.0348972, 0.999379)
writing to /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/template.nii...
fslregister --s sub-01 --mov /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/template.nii --reg /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/reg.init.dat --niters 1 --maxangle 90 --tmp /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov

Log file is /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/reg.init.dat.fslregister.log

Tue Oct 10 10:25:38 EDT 2023
--s sub-01 --mov /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/template.nii --reg /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/reg.init.dat --niters 1 --maxangle 90 --tmp /home/dylan/Documents/TRACULA/OUTPUTS/sub-01/dmri/xfms/tmp.bbregister.473930/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov
fslregister 7.2.0
dylan-virtual-machine
Linux dylan-virtual-machine 6.2.0-32-generic #32~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Fri Aug 18 10:40:13 UTC 2 x86_64 GNU/Linux
nIters 1
if: Expression Syntax.
ERROR: cannot find /home/dylan/Documents/TRACULA/INPUTS/BIDS/derivatives/freesurfer/sub-01/mri/brainmask