If you're using v7XX, then you can use mris_place_surfaces. Look in the log file for the command line.

On 12/9/2020 6:15 AM, Antonín Škoch wrote:

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Dear experts,

I have processed my data with -T2pial option. I would like now to also compute thickness from woT2.pial surfaces (i.e. surfaces created by T1 only). Is here a comannd which does the trick, without running recon-all -pial (which rewrites current .pial and .thickness files generatedy by -T2pial? I am using freeSurfer version 6.0.

Thank you in advance,

Antonin Skoch
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