Logfile for fslregister
Wed Jun 19 20:41:18 CST 2013
--s bert --reg fbert1.feat/reg/freesurfer/anat2exf.register.dat --mov fbert1.feat/example_func.nii.gz --dof 6 --bins 256 --cost corratio --fslmat fbert1.feat/reg/freesurfer/exf2anat.fsl.mat --fsvol brainmask --maxangle 90 --initfslmat fbert1.feat/reg/freesurfer/exf2anat.init.fsl.mat --tmp fbert1.feat/reg/freesurfer/tmp --out fbert1.feat/reg/freesurfer/tmp/exf-in-anat.nii.gz
$Id: fslregister,v 1.34.2.1 2011/03/28 20:35:36 greve Exp $
T7600-3
Linux T7600-3 2.6.32-220.el6.x86_64 #1 SMP Wed Nov 9 08:03:13 EST 2011 x86_64 x86_64 x86_64 GNU/Linux
nIters 1
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/usr/local/freesurfer/subjects/fbert-feat
mri_convert ERROR: could not determine file for /usr/local/freesurfer/subjects/bert/mri/ERROR: fbert1.feat/reg/freesurfer/tmp/refvol.fslregister.nii
mri_convert ERROR: could not determine file for /usr/local/freesurfer/subjects/bert/mri/ERROR: fbert1.feat/reg/freesurfer/tmp/refvol.fslregister.nii 

mri_convert: extra arguments ("not" and following)

type mri_convert -u for usage

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/usr/local/freesurfer/subjects/fbert-feat
mri_convert fbert1.feat/example_func.nii.gz fbert1.feat/reg/freesurfer/tmp/movvol.fslregister.nii --frame 0
mri_convert fbert1.feat/example_func.nii.gz fbert1.feat/reg/freesurfer/tmp/movvol.fslregister.nii --frame 0 
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from fbert1.feat/example_func.nii.gz...
TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
keeping frame 0
writing to fbert1.feat/reg/freesurfer/tmp/movvol.fslregister.nii...
Mov determinant is -47.2656
Wed Jun 19 20:41:18 CST 2013
/usr/local/freesurfer/subjects/fbert-feat
flirt.fsl -ref fbert1.feat/reg/freesurfer/tmp/refvol.fslregister.nii -in fbert1.feat/reg/freesurfer/tmp/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat fbert1.feat/reg/freesurfer/tmp/fslmat0.trans.mat -schedule /usr/local/fsl/etc/flirtsch/xyztrans.sch -init fbert1.feat/reg/freesurfer/exf2anat.init.fsl.mat
** ERROR (nifti_image_read): failed to find header file for 'fbert1.feat/reg/freesurfer/tmp/refvol.fslregister'
** ERROR: nifti_image_open(fbert1.feat/reg/freesurfer/tmp/refvol.fslregister): bad header info
Error: failed to open file fbert1.feat/reg/freesurfer/tmp/refvol.fslregister
ERROR: Could not open image fbert1.feat/reg/freesurfer/tmp/refvol.fslregister
Image Exception : #22 :: Failed to read volume fbert1.feat/reg/freesurfer/tmp/refvol.fslregister.nii
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Wed Jun 19 20:41:18 CST 2013
/usr/local/freesurfer/subjects/fbert-feat
flirt.fsl -ref fbert1.feat/reg/freesurfer/tmp/refvol.fslregister.nii -in fbert1.feat/reg/freesurfer/tmp/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat fbert1.feat/reg/freesurfer/exf2anat.fsl.mat -init fbert1.feat/reg/freesurfer/tmp/fslmat0.trans.mat -schedule /usr/local/freesurfer/bin/flirt.newdefault.20080811.sch -o fbert1.feat/reg/freesurfer/tmp/outvol.fslregister.nii
** ERROR (nifti_image_read): failed to find header file for 'fbert1.feat/reg/freesurfer/tmp/refvol.fslregister'
** ERROR: nifti_image_open(fbert1.feat/reg/freesurfer/tmp/refvol.fslregister): bad header info
Error: failed to open file fbert1.feat/reg/freesurfer/tmp/refvol.fslregister
ERROR: Could not open image fbert1.feat/reg/freesurfer/tmp/refvol.fslregister
Image Exception : #22 :: Failed to read volume fbert1.feat/reg/freesurfer/tmp/refvol.fslregister.nii
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Wed Jun 19 20:41:18 CST 2013
/usr/local/freesurfer/subjects/fbert-feat
mri_convert fbert1.feat/reg/freesurfer/tmp/outvol.fslregister.nii fbert1.feat/reg/freesurfer/tmp/exf-in-anat.nii.gz
mri_convert fbert1.feat/reg/freesurfer/tmp/outvol.fslregister.nii fbert1.feat/reg/freesurfer/tmp/exf-in-anat.nii.gz 
niiRead(): error opening file fbert1.feat/reg/freesurfer/tmp/outvol.fslregister.nii
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from fbert1.feat/reg/freesurfer/tmp/outvol.fslregister.nii...
tkregister2_cmdl --s bert --mov fbert1.feat/example_func.nii.gz --reg fbert1.feat/reg/freesurfer/anat2exf.register.dat --fslreg fbert1.feat/reg/freesurfer/exf2anat.fsl.mat --noedit
tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl
ERROR: cannot open fbert1.feat/reg/freesurfer/exf2anat.fsl.mat
 
Started at Wed Jun 19 20:41:18 CST 2013 
Ended   at Wed Jun 19 20:41:18 CST 2013
 
fslregister Done