On Fri, Nov 30, 2012 at 7:31 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Look like it is running out of memory. How much ram do you have on that machine?
Bruce

On Nov 30, 2012, at 9:29 PM, Negar Memarian <negar.memarian@utoronto.ca> wrote:

> Hello,
>
> I ran recon-all -all on my subject. The process ended after several minutes with this message at the end:
> recon-all -s 350_FS exited with ERRORS at Fri Nov 30 17:57:59 PST 2012
>
> I tried loading the pial and white surfaces for editing using this command:
> tkmedit 350_FS brainmask.mgz rh.white -aux-surface lh.white
>
> but looks like these surfaces do not exist (since the recon-all exited prematurely). When I check the recon-all.log file I do not see any errors except a few MCSRCH errors. So I cannot understand what exactly went wrong in the recon-all. I've attached the recon-all log file. Can someone please tell me what the problem is and how I can fix it?
>
> Many thanks,
> Negar
> p.s. I tried on more than one subject and I still face the same issue.
>
>
> Negar Memarian, MASc, PhD
> NSERC Postdoctoral Fellow
> Department of Neurology
> David Geffen School of Medicine at UCLA
>
> <recon-all.log>
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