Hi all,

Library issues are all set, I now am having a problem getting freesurfer to recognize .img and .hdr files,



[root@ebrcb-dhcp-240-47 freesurfer]# /usr/local/freesurfer/bin/recon-all -autorecon1 -subjid je001_018_4_1-001
INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
-rw-rw-r-- 1 root root 16873 Jul 27 10:16 /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/scripts/recon- all.log
Linux ebrcb-dhcp-240-47.bumc.bu.edu 2.6.18-8.1.8.el5 #1 SMP Tue Jul 10 06:50:22 EDT 2007 i686 i686 i386 GNU/Linux
#--------------------------------------------
#@# MotionCor Fri Jul 27 10:17:12 EDT 2007
ERROR: no run data found in /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/mri. Make sure to
have a volume called 001.mgz in  /usr/local/freesurfer/subjects/je001_018_4_1-001/freesurfer/je001_018_4_1-001/mri/orig.
If you have a second run of data call it 002.mgz, etc.
See also: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion
Linux ebrcb-dhcp-240-47.bumc.bu.edu 2.6.18-8.1.8.el5 #1 SMP Tue Jul 10 06:50:22 EDT 2007 i686 i686 i386 GNU/Linux

recon-all exited with ERRORS at Fri Jul 27 10:17:12 EDT 2007


files are located where freesurfer is looking but isnt finding them, any help would be great, thanks!


Andy

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