Hello,<div><br></div><div>I found a couple of scripts that might work, namely the mri_hausdorff_dist, mri_distance_transform, the mri_compute commands, and the mri_seg_diff.  They all seem to do one part of what I want, but none all together.  Has anyone done this before and could they point me in the right direction?</div>

<div><br></div><div>Thank you,<br>Jeff Sadino<br><br><div class="gmail_quote">On Mon, Apr 11, 2011 at 1:07 PM, Jeff Sadino <span dir="ltr">&lt;<a href="mailto:jsadino.queens@gmail.com">jsadino.queens@gmail.com</a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">Hello,<div><br></div><div>I am interested in a way to visualize the differences in the volume in subcortical structures, preferably in 3D.  For example, I would like to view the Thalamus of controls.  And then I would like to overlay a color-coded map that shows the difference between the volume of the Control Thalamus and the Study Thalamus.  I have seen a couple of different ways to do this, but they all seem rather clunky.  Can anyone recommend a method for this?</div>


<div><br></div><div>Thank you very much,</div><div>Jeff Sadino</div>
</blockquote></div><br></div>