selxavg3-sess log file
/Applications/freesurfer/fsfast/bin/selxavg3-sess
-s subj439rest -a fc.lpccseed.surf.lh
$Id: selxavg3-sess,v 1.57.2.1 2011/12/09 20:06:47 greve Exp $
uid=0(root) gid=0(wheel) groups=0(wheel),701(com.apple.sharepoint.group.1),1(daemon),2(kmem),3(sys),4(tty),5(operator),8(procview),9(procmod),12(everyone),20(staff),29(certusers),61(localaccounts),80(admin),702(com.apple.sharepoint.group.2),33(_appstore),98(_lpadmin),100(_lpoperator),204(_developer),395(com.apple.access_ftp),101(com.apple.access_screensharing-disabled),399(com.apple.access_ssh)
/Applications/freesurfer/LagStructure
Darwin ERIKs-iMac.local 15.5.0 Darwin Kernel Version 15.5.0: Tue Apr 19 18:36:36 PDT 2016; root:xnu-3248.50.21~8/RELEASE_X86_64 x86_64
Mon Jul  4 11:01:40 PDT 2016
preproc-sess -s subj439rest -d /Applications/freesurfer/LagStructure -a fc.lpccseed.surf.lh -nolog
--------------------------------------------------------------
preproc-sess logfile is /dev/null
--------------------------------------------------------------
$Id: preproc-sess,v 1.45.2.3 2013/01/22 22:09:10 greve Exp $
root
setenv FREESURFER_HOME /Applications/freesurfer
setenv SUBJECTS_DIR /Applications/freesurfer/subjects
Darwin ERIKs-iMac.local 15.5.0 Darwin Kernel Version 15.5.0: Tue Apr 19 18:36:36 PDT 2016; root:xnu-3248.50.21~8/RELEASE_X86_64 x86_64
/Applications/freesurfer/LagStructure
/Applications/freesurfer/fsfast/bin/preproc-sess
-s subj439rest -d /Applications/freesurfer/LagStructure -a fc.lpccseed.surf.lh -nolog
Mon Jul  4 11:01:40 PDT 2016
instem   f 
mc   1     f fmcpr 
stc  0     fmcpr
sm   0   
mask 1   brain
subj439rest Template -----------------------------
mktemplate-sess -s subj439rest -d /Applications/freesurfer/LagStructure -fsd rest -nolog -update
 
Session: /Applications/freesurfer/LagStructure/subj439rest ----------------
Mon Jul  4 11:01:40 PDT 2016
Detected input format at nii.gz
subj439rest Update not needed
  Run: 007 ----------------
  Mon Jul  4 11:01:40 PDT 2016
  subj439rest 007 Update not needed
Mon Jul  4 11:01:40 PDT 2016
mktemplate-sess completed 
subj439rest Mask ------------------------
mkbrainmask-sess -maskstem brain -fsd rest -s subj439rest -d /Applications/freesurfer/LagStructure -nolog -update
------------------------------------------------
/Applications/freesurfer/LagStructure/subj439rest 
Mon Jul  4 11:01:41 PDT 2016
subj439rest Update not needed for session-level mask
subj439rest Update not needed for run 007 mask
subj439rest Update not needed for run 007 meanval
Mon Jul  4 11:01:41 PDT 2016
mkbrainmask-sess done
subj439rest Registration -----------------------------
register-sess -s subj439rest -d /Applications/freesurfer/LagStructure -fsd rest -dof 6 -per-run -nolog -update
--------------------------------------------------------------
register-sess logfile is /dev/null
--------------------------------------------------------------
Mon Jul  4 11:01:41 PDT 2016

setenv SUBJECTS_DIR /Applications/freesurfer/subjects
cd /Applications/freesurfer/LagStructure
/Applications/freesurfer/fsfast/bin/register-sess -s subj439rest -d /Applications/freesurfer/LagStructure -fsd rest -dof 6 -per-run -nolog -update

freesurfer-Darwin-lion-stable-pub-v5.3.0
Darwin ERIKs-iMac.local 15.5.0 Darwin Kernel Version 15.5.0: Tue Apr 19 18:36:36 PDT 2016; root:xnu-3248.50.21~8/RELEASE_X86_64 x86_64
 
Session: /Applications/freesurfer/LagStructure/subj439rest ----------------
Mon Jul  4 11:01:41 PDT 2016
  Run: 007 ----------------
Mon Jul  4 11:01:41 PDT 2016
Update not needed
Mon Jul  4 11:01:41 PDT 2016
register-sess completed 
subj439rest MC -----------------------------
mc-sess -fstem f -fmcstem fmcpr -s subj439rest -d /Applications/freesurfer/LagStructure -fsd rest -per-run -nolog -update
Logfile is /dev/null
-------------------------------------------
/Applications/freesurfer/LagStructure/subj439rest 
RunList: 007
subj439rest 007 Update not needed


Mon Jul  4 11:01:41 PDT 2016
mc-sess completed SUCCESSFULLY
subj439rest To Surface -----------------------------
rawfunc2surf-sess -fwhm 5 -s subj439rest -d /Applications/freesurfer/LagStructure -fsd rest -hemi lh -trgsubject fsaverage -nolog -update -per-run
instem fmcpr
outstem fmcpr.sm5.fsaverage.hemi
------------------------------ 
1/1 subj439rest
  1/1 subj439rest 007 lh ---------
    Mon Jul  4 11:01:41 PDT 2016
/Applications/freesurfer/LagStructure/subj439rest/rest/007/masks/brain.fsaverage.lh.nii.gz does not need updating
    subj439rest 007 Update not needed

Mon Jul  4 11:01:41 PDT 2016
rawfunc2surf-sess completed 
----------------------------------------
Started at Mon Jul 4 11:01:40 PDT 2016
Ended   at Mon Jul  4 11:01:41 PDT 2016
preproc-sess done
-------------------------------------------
/Applications/freesurfer/LagStructure/subj439rest 
Mon Jul  4 11:01:41 PDT 2016
anadir = /Applications/freesurfer/LagStructure/subj439rest/rest/fc.lpccseed.surf.lh
------------------------------------------
% Mon Jul  4 11:01:41 PDT 2016  
% /Applications/freesurfer/LagStructure  
%  fc.lpccseed.surf.lh  
  
  
%--------------------------------
sxa3pwd = '/Applications/freesurfer/LagStructure'
sxa3cmd = '/Applications/freesurfer/fsfast/bin/selxavg3-sess -s subj439rest -a fc.lpccseed.surf.lh'
which fast_selxavg3
okfile         = '/tmp/selxavg3-sess-10785.ok';
if(fast_fileexists(okfile)) delete(okfile); end
monly          = 0;
perrun         = 0;
jkrun          = 0;
DoGLMFit       = 1;
DoContrasts    = 1;
ConList        = splitstring('L_Posteriorcingulate');
DoSynth        = 0;
SynthNoiseAmp  = 1;
SynthNoiseAR1  = .3;
SynthSignalAmp = 0;
SynthSeed      = -1;
sess           = '/Applications/freesurfer/LagStructure/subj439rest';
analysis = 'fc.lpccseed.surf.lh';
flacname = '';
outtop = '';
DoFWHM = 0;
MatlabSaveRes = 0;
SaveResUnwhitened = 0;
fast_selxavg3;
if(~fast_fileexists(okfile) && ~monly); quit; end
  
  
quit;
------------------------------------------
------------------------------------------
------- matlab output --------------------
------------------------------------------