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What should the design look like? I know that without covariate the design is as follows:
GroupDescriptorFile 1
Class Subject1
Class Subject2
Variables Tp1vsTp2.Group1 Tp1vsTp2.Grroup2
Input Subject1_time1 Subject1 1 0
Input Subject1_time2 Subject1 -1 0
Input Subject2_time1 Subject2 0 1
Input Subject2_time2 Subject02 0 -1
Design matrix:
1 0 1 0
1 0 -1 0
0 1 0 1
0 1 0 -1
Contrasts (.mtx files):Tp1vsTp2.Group1 0 0 1 0Tp1vsTp2.Group2 0 0 0 -1Interaction (timexgroup) 0 0 1 -1