Do you mean neither are in the "conformed" 256^3, 1mm^3 FreeSurfer coordinates?Dear All,
I have a functional and a T1 registered, but they are not in anatomical coordinates.
Was the T1 used to generate the FS results? If so, why do you need to get it into FS coordinates? If not, then use bbregister to create the registration file, then use mri_vol2vol to map it into FS space.I put the anatomical in the desired position by using tkregister2.
Use bbregister to register the functional to FS coordinates, then again use mri_vol2vol.I was hoping to use the output reg file to re-position the functional as well.
I got an unexpected output!
The functional looks reoriented BUT, coronal is horizontal, horizontal is coronal and sagittal is 90deg rotated.
How did it happen and how can I fix the problem?
Thanks,Ilaria
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