Hi Fs Experts,

In order to calculate the right hemispheric white matter mean fractional anisotropy (FA), I did the following:

1. I used “ rh.dwhite.ribon.mgz” as input in mri_binaraize to create a binary mask  (I did convert mgz to nii and vice versa)

2. I used mri_segstats --seg /aseg.mgz --ctab $FREESURFER_HOME/FreeSurferColorLUT.txt --i fa.anat.mgh –mask <MY BINARY MASK_THE OUTPUT OF MY PREVIOUS STEP>--sum fa.stats to generate the statistics .

Is that right?

Kindly, Any suggestions or comments?

Thanks,

Mohamad