External Email - Use Caution
Apologies for repeat email – I’m getting the following error message, is there something I should add?
developer@developer-VirtualBox:~$ mri_convert i.mgz i.img
mri_convert i.mgz i.img
reading from i.mgz...
error: mghRead(/home/developer/i.mgz, -1): could not open file
developer@developer-VirtualBox:~$
From: Rachel Wagner
Sent: June 15, 2022 5:04 PM
To: Freesurfer@nmr.mgh.harvard.edu
Subject: SPM to FreeSurfer
Hello,
I am trying to take my SPM images and cortically project them with free surfer (SpmPainting - Free Surfer Wiki (harvard.edu). As it might be quite obvious, I have very
little experience using these softwares.
I am typing in the suggested code as follows:
developer@developer-VirtualBox:~$ mri_convert $SUBJECTS_DIR/subjectname/mri/brain.mgz brain.img
mri_convert /usr/local/freesurfer/7.2.0/subjects/subjectname/mri/brain.mgz brain.img
reading from /usr/local/freesurfer/7.2.0/subjects/subjectname/mri/brain.mgz...
error: mghRead(/usr/local/freesurfer/7.2.0/subjects/subjectname/mri/brain.mgz, -1): could not open file
developer@developer-VirtualBox:~$ ^C
developer@developer-VirtualBox:~$
Is there something I am doing incorrectly?
Thank you!
Rachel