I have these files in the folder 18135.
18135.RS.mgz           18135_RS_register.dat.log 18135_RS_register.dat.sum
18135.RS+orig.BRIK     18135_RS_register.dat.log.old 18135.RS.template.mgz
18135.RS+orig.HEAD     18135_RS_register.dat.mincost
18135_RS_register.dat  18135_RS_register.dat.param

and other freesurfer files in the folder 18135_FS (in the respective folders.. mri, surf...)...

I copied 18135.RS.mgz in the 18135_FS/mri/orig folder also.

I have tried both directories to be SUBJECTS_DIR but it didn't work.

Do I need to move all the files in 18135_FS/mri/orig folder?


On 12/18/2012 4:38 PM, Bruce Fischl wrote:
what is your SUBJECTS_DIR env variable?
On Tue, 18 Dec 2012, priyank wrote:

Hi,
      I am using the command to check my registration and getting this
error message: could not find orig as either mgz or COR. This is the
command I am using.
      tkregister2 --mov 18135.RS.mgz --reg 18135_RS_register.dat --surf
----------------------------------------OUTPUT--------------------------------------------------
INFO: no target volume specified, assuming FreeSurfer orig volume.
target  volume orig
movable volume 18135.RS.mgz
reg file       18135_RS_register.dat
LoadVol        1
ZeroCRAS       0
$Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $
Diagnostic Level -1
---- Input registration matrix --------
-0.994  -0.040   0.100   2.799;
-0.097  -0.071  -0.993   2.262;
-0.047   0.997  -0.067   5.775;
 0.000   0.000   0.000   1.000;
float2int = 0
---------------------------------------
ERROR: could not find orig as either mgz or COR
------------------------------------------------------------------------------------------------



_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer





The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.