On Mar 1, 2022, at 7:44 PM, Adam Martersteck <acmarter@gmail.com> wrote:
External Email - Use Caution
Hi Sam,
I can tell from your crash report you have a LG HDR 4K, 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) plugged in.You might try unplugging any external monitors and just having your native laptop display on then starting FreeView and seeing if it works.
I had the same issue; see here: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg70721.htmlStill unresolved. Can open FreeView fine without a monitor plugged in but get a segmentation fault whenever I'm using an external display.
-Adam
_______________________________________________On Tue, Mar 1, 2022 at 4:04 PM Sam Buck Johnson <samjohns@stanford.edu> wrote:
External Email - Use Caution
Dear Freesurfer experts,
I am writing to request technical assistance with freeview. I use freesurfer and freeview in my current research, where they are very valuable tools. However, upon upgrading my macbook's OS to macOS Monterey, Version 12.2.1, I now am unable to open freeview; it quits immediately upon starting. The error message indicates a segmentation fault, and in fact my error (and the error message) appears to be exactly the same as the one encountered by Alex White in this thread: https://secure-web.cisco.com/1IXdnFyTKmN2mh6oaF1iVQ3_Ho1Z9szlPmaAOZrSIy7EZwFSGBaRz93qDmsCiQy2Z6Qu1MlfziSSlmz6_q4xH7dp6jWhtuz18sAR4YqlHt-uhVfECWgtUIajup6ToOMrtI21BszCMS3Hm_T5vsdfqldD--V9-BvmSEW30VQWsJgLj43SWhxbHhg9KdLrvQTamGOv2uE-NWdprChzhAyZzDujkMV9BIck4KXxAkJdty3M8iwplk047j56UI0xeeKds_0MEbvRViDuarya-0fuQVEEEBjpkBoJxgsZdlqpgFYb_af8AiWOAL4uJbIFlakyC2-hddR2bv3IQY792SuvOXA/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg67739.html
I have been in correspondence with Alex, and he mentioned that you were able to help him resolve the issue, but that it required you to send him a patched version of freeview (or freesurfer?). I have the identical problem on freeview 7.1.1 and 7.2.0, but if possible I would prefer to continue working with your latest version, 7.2.0.
Please do let me know if further information could help you understand this issue better. For the time being, I have copied the error message that prints to terminal and the full error report, both below.
Any help/advice is much appreciated.
Sincerely,
Sam Johnson
Postdoctoral Scholar
Yeatman Brain and Education Lab, Stanford University GSE
-----
# terminal error message:
(base) samjohns@DNab40bbcb 7.2.0 % freeview
/Applications/freesurfer/7.2.0/bin/freeview: line 2: 1968 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@"
# full crash report
-------------------------------------
Translated Report (Full Report Below)
-------------------------------------
Process: freeview [1673]
Path: /Applications/freesurfer/*/Freeview.app/Contents/MacOS/freeview
Identifier: com.freesurfer.freeview
Version: ???
Code Type: X86-64 (Translated)
Parent Process: Exited process [1672]
Responsible: Terminal [1587]
User ID: 502
Date/Time: 2022-03-01 15:12:51.8713 -0800
OS Version: macOS 12.2.1 (21D62)
Report Version: 12
Anonymous UUID: DCA45306-7159-2569-6BDE-CF94BEE1E522
Time Awake Since Boot: 1200 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000545845545f67
Exception Codes: 0x0000000000000001, 0x0000545845545f67
Exception Note: EXC_CORPSE_NOTIFY
Termination Reason: Namespace SIGNAL, Code 11 Segmentation fault: 11
Terminating Process: exc handler [1673]
VM Region Info: 0x545845545f67 is not in any region. Bytes after previous region: 92257060675432 Bytes before following region: 12815019253913
REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL
commpage (reserved) 1000000000-7000000000 [384.0G] ---/--- SM=NUL ...(unallocated)
---> GAP OF 0x5f9000000000 BYTES
MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=PRV
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 freeview 0x104ec0ff8 0x104ce2000 + 1961976
1 QtWidgets 0x12046c6ed QWidget::event(QEvent*) + 1117
2 QtWidgets 0x12057dc45 QMainWindow::event(QEvent*) + 277
3 QtWidgets 0x12043070d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
4 QtWidgets 0x120431b12 QApplication::notify(QObject*, QEvent*) + 594
5 QtCore 0x12266e564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
6 QtWidgets 0x12048aa74 0x120420000 + 436852
7 QtWidgets 0x12043070d QApplicationPrivate::notify_helper(QObject*, QEvent*) + 269
8 QtWidgets 0x120431b12 QApplication::notify(QObject*, QEvent*) + 594
9 QtCore 0x12266e564 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
10 QtGui 0x1211e2a74 QGuiApplicationPrivate::processGeometryChangeEvent(QWindowSystemInterfacePrivate::GeometryChangeEvent*) + 516
11 QtGui 0x1211e3420 QGuiApplicationPrivate::processWindowScreenChangedEvent(QWindowSystemInterfacePrivate::WindowScreenChangedEvent*) + 736
12 QtGui 0x1211c1c33 bool QWindowSystemInterfacePrivate::handleWindowSystemEvent<QWindowSystemInterface::SynchronousDelivery>(QWindowSystemInterfacePrivate::WindowSystemEvent*) + 115
13 libqcocoa.dylib 0x121eb4c77 0x121e96000 + 126071
14 libqcocoa.dylib 0x121eae862 0x121e96000 + 100450
15 libqcocoa.dylib 0x121eae2eb 0x121e96000 + 99051
16 QtGui 0x1211ec1dc QWindowPrivate::create(bool, unsigned long long) + 140
17 QtWidgets 0x120459e31 QWidgetPrivate::create() + 1201
18 QtWidgets 0x120458b22 QWidget::create(unsigned long long, bool, bool) + 322
19 QtWidgets 0x12057e4d7 QMainWindow::setUnifiedTitleAndToolBarOnMac(bool) + 55
20 freeview 0x104eaf497 0x104ce2000 + 1889431
21 freeview 0x104ea950e 0x104ce2000 + 1864974
22 freeview 0x104de279a 0x104ce2000 + 1050522
23 dyld 0x2158184fe start + 462
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x7ff7ffc578e4 0x7ff7ffc53000 + 18660
1 runtime 0x7ff7ffc64928 0x7ff7ffc53000 + 71976
2 runtime 0x7ff7ffc660a4 0x7ff7ffc53000 + 77988
Thread 2:
0 runtime 0x7ff7ffc75814 0x7ff7ffc53000 + 141332
Thread 3:
0 runtime 0x7ff7ffc75814 0x7ff7ffc53000 + 141332
Thread 4:: Dispatch queue: com.apple.dock.fullscreen
0 dyld 0x215824e0c dyld4::Loader::LoaderRef::loader(dyld4::RuntimeState const&) const + 68
1 dyld 0x21582cdb1 dyld4::PrebuiltLoader::dependent(dyld4::RuntimeState const&, unsigned int, dyld4::Loader::DependentKind*) const + 95
2 dyld 0x215828a1e dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 532
3 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
4 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
5 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
6 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
7 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
8 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
9 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
10 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
11 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
12 dyld 0x215828a5b dyld4::Loader::hasExportedSymbol(Diagnostics&, dyld4::RuntimeState&, char const*, dyld4::Loader::ExportedSymbolMode, dyld4::Loader::ResolvedSymbol*, dyld3::Array<dyld4::Loader const*>*) const + 593
13 dyld 0x215837b4c dyld4::APIs::dlsym(void*, char const*) + 656
14 SkyLight 0x7ff811fbf581 __loginframework_vtable_block_invoke + 605
15 libdispatch.dylib 0x7ff80ccd8cc9 _dispatch_client_callout + 8
16 libdispatch.dylib 0x7ff80ccd9ec1 _dispatch_once_callout + 20
17 SkyLight 0x7ff811fc0de5 SLSCopyCurrentSessionPropertiesInternalBridge + 366
18 SkyLight 0x7ff811e6a097 SLSessionCopyCurrentDictionary + 12
19 AppKit 0x7ff80f9e04ee -[NSDockConnection _makeConnectionIfNeededWithRetryInterval:onDemand:] + 47
20 AppKit 0x7ff8101b9720 __35-[NSDockConnection startConnection]_block_invoke.37 + 45
21 libdispatch.dylib 0x7ff80ccd7ad8 _dispatch_call_block_and_release + 12
22 libdispatch.dylib 0x7ff80ccd8cc9 _dispatch_client_callout + 8
23 libdispatch.dylib 0x7ff80ccdecee _dispatch_lane_serial_drain + 696
24 libdispatch.dylib 0x7ff80ccdf7c8 _dispatch_lane_invoke + 366
25 libdispatch.dylib 0x7ff80cce97e1 _dispatch_workloop_worker_thread + 758
26 libsystem_pthread.dylib 0x7ff80ce8f074 _pthread_wqthread + 326
27 libsystem_pthread.dylib 0x7ff80ce8dffb start_wqthread + 15
Thread 5:
0 runtime 0x7ff7ffc75814 0x7ff7ffc53000 + 141332
Thread 6:
0 runtime 0x7ff7ffc75814 0x7ff7ffc53000 + 141332
Thread 7:
0 runtime 0x7ff7ffc75814 0x7ff7ffc53000 + 141332
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000545845545f5f rbx: 0x000000031e5aac00 rcx: 0x0000000000010000 rdx: 0x000000012046c6dd
rdi: 0x00007ff815d4f000 rsi: 0x000000031e5a9c78 rbp: 0x000000031e5a9730 rsp: 0x000000031e5a9720
r8: 0x0000000000000000 r9: 0x0000000000000000 r10: 0x00000001220129e0 r11: 0x00007ff80f8c8bb9
r12: 0x00007ff175745090 r13: 0x000000031e5aac00 r14: 0x000000031e5a9c78 r15: 0x000000031e5a9c78
rip: 0x0000000104ec0ff8 rfl: 0x0000000000000203
tmp0: 0x0000000115a9c01c tmp1: 0x000000012046c6ed tmp2: 0x0000000120a3c1e8
Binary Images:
0x104ce2000 - 0x106349fff com.freesurfer.freeview (*) <35cc1656-e7ff-32a5-8ec9-9faf896f9915> /Applications/freesurfer/*/Freeview.app/Contents/MacOS/freeview
0x120420000 - 0x12085efff org.qt-project.QtWidgets (5.12) <ef671b84-7965-3c74-89df-09c3fa9096ca> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtWidgets.framework/Versions/5/QtWidgets
0x122484000 - 0x1229b9fff org.qt-project.QtCore (5.12) <ae294ca9-b3ec-3f0e-b67a-509a13c0c913> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtCore.framework/Versions/5/QtCore
0x1211ac000 - 0x1215f8fff org.qt-project.QtGui (5.12) <9cc34b01-ae4a-3ff2-ac1b-de08b8fbbbae> /Applications/freesurfer/*/Freeview.app/Contents/Frameworks/QtGui.framework/Versions/5/QtGui
0x121e96000 - 0x121ffcfff libqcocoa.dylib (*) <14bc2336-68e6-3ace-b3a9-f21152a64785> /Applications/freesurfer/*/Freeview.app/Contents/PlugIns/platforms/libqcocoa.dylib
0x215813000 - 0x21587efff dyld (*) <7de33963-bbc5-3996-ba6e-f1d562c17c95> /usr/lib/dyld
0x7ff7ffc53000 - 0x7ff7ffc82fff runtime (*) <faca02c7-0a4c-3629-a746-55ddcfee9116> /usr/libexec/rosetta/runtime
0x7ff811d55000 - 0x7ff8120eafff com.apple.SkyLight (1.600.0) <eab4373e-52ca-38d7-963a-9f5bd71824e9> /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7ff80ccd6000 - 0x7ff80cd1cfff libdispatch.dylib (*) <67d92c93-aa68-34c2-964b-23e8a8d32098> /usr/lib/system/libdispatch.dylib
0x7ff80f86e000 - 0x7ff8106fffff com.apple.AppKit (6.9) <9d3ab204-4858-3120-b002-5c38b02edec4> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7ff80ce8c000 - 0x7ff80ce97fff libsystem_pthread.dylib (*) <ee564342-d8f2-396d-b642-40092cf34d82> /usr/lib/system/libsystem_pthread.dylib
0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ???
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=964.1M resident=0K(0%) swapped_out_or_unallocated=964.1M(100%)
Writable regions: Total=1.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 2
Activity Tracing 256K 1
CG backing stores 5056K 8
ColorSync 228K 25
CoreGraphics 8K 2
CoreUI image data 152K 1
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 216.2M 34
MALLOC guard page 192K 9
MALLOC_MEDIUM (reserved) 240.0M 2 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Rosetta Arena 4096K 2
Rosetta Generic 736K 181
Rosetta IndirectBranch 512K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 100K 10
Rosetta Thread Context 100K 10
STACK GUARD 20K 5
Stack 11.1M 7
Stack Guard 56.0M 2
VM_ALLOCATE 8280K 29
VM_ALLOCATE (reserved) 4K 1 reserved VM address space (unallocated)
__DATA 262.5M 320
__DATA_CONST 12.2M 173
__DATA_DIRTY 539K 99
__FONT_DATA 4K 1
__LINKEDIT 704.8M 29
__OBJC_RO 81.8M 1
__OBJC_RW 3136K 2
__TEXT 259.3M 332
__UNICODE 588K 1
dyld private memory 1024K 1
mapped file 5.1G 429
shared memory 848K 22
unshared pmap 5504K 3
=========== ======= =======
TOTAL 7.4G 1749
TOTAL, minus reserved VM space 6.8G 1749
-----------
Full Report
-----------
{"app_name":"freeview","timestamp":"2022-03-01 15:12:52.00 -0800","app_version":"","slice_uuid":"35cc1656-e7ff-32a5-8ec9-9faf896f9915","build_version":"","platform":1,"bundleID":"com.freesurfer.freeview","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.2.1 (21D62)","incident_id":"78ED639A-5BDF-48BF-88B6-8A9AE3997115","name":"freeview"}
{
"uptime" : 1200,
"procLaunch" : "2022-03-01 15:12:51.6463 -0800",
"procRole" : "Background",
"version" : 2,
"userID" : 502,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"procStartAbsTime" : 30601251608,
"coalitionID" : 1327,
"osVersion" : {
"train" : "macOS 12.2.1",
"build" : "21D62",
"releaseType" : "User"
},
"captureTime" : "2022-03-01 15:12:51.8713 -0800",
"incident" : "78ED639A-5BDF-48BF-88B6-8A9AE3997115",
"bug_type" : "309",
"pid" : 1673,
"procExitAbsTime" : 30606634548,
"translated" : true,
"cpuType" : "X86-64",
"procName" : "freeview",
"procPath" : "\/Applications\/freesurfer\/*\/Freeview.app\/Contents\/MacOS\/freeview",
"bundleInfo" : {"CFBundleIdentifier":"com.freesurfer.freeview"},
"storeInfo" : {"deviceIdentifierForVendor":"61B48C8D-0860-568E-953B-3DE776CD3C66","thirdParty":true},
"parentProc" : "Exited process",
"parentPid" : 1672,
"coalitionName" : "com.apple.Terminal",
"crashReporterKey" : "DCA45306-7159-2569-6BDE-CF94BEE1E522",
"responsiblePid" : 1587,
"responsibleProc" : "Terminal",
"sip" : "enabled",
"vmRegionInfo" : "0x545845545f67 is not in any region. Bytes after previous region: 92257060675432 Bytes before following region: 12815019253913\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL ...(unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600008000000 [128.0M] rw-\/rwx SM=PRV ",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000545845545f67","rawCodes":[1,92738097012583],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000545845545f67"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"exc handler","byPid":1673},
"vmregioninfo" : "0x545845545f67 is not in any region. Bytes after previous region: 92257060675432 Bytes before following region: 12815019253913\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n commpage (reserved) 1000000000-7000000000 [384.0G] ---\/--- SM=NUL ...(unallocated)\n---> GAP OF 0x5f9000000000 BYTES\n MALLOC_NANO 600000000000-600008000000 [128.0M] rw-\/rwx SM=PRV ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"triggered":true,"id":21764,"threadState":{"r13":{"value":13394160640},"rflags":{"value":515},"rax":{"value":92738097012575},"rosetta":{"tmp2":{"value":4842570216},"tmp1":{"value":4836476653},"tmp0":{"value":4658413596}},"r14":{"value":13394156664},"rsi":{"value":13394156664},"r8":{"value":0},"rdx":{"value":4836476637,"symbolLocation":1101,"symbol":"QWidget::event(QEvent*)"},"r10":{"value":4865468896},"r9":{"value":0},"r15":{"value":13394156664},"rbx":{"value":13394160640},"r11":{"value":140703389486009,"symbolLocation":0,"symbol":"-[NSView window]"},"rip":{"value":4377546744},"rbp":{"value":13394155312},"rsp":{"value":13394155296},"r12":{"value":140675034402960},"rcx":{"value":65536},"flavor":"x86_THREAD_STATE","rdi":{"value":140703494893568}},"queue":"com.apple.main-thread","frames":[{"imageOffset":1961976,"imageIndex":0},{"imageOffset":313069,"symbol":"QWidget::event(QEvent*)","symbolLocation":1117,"imageIndex":1},{"imageOffset":1432645,"symbol":"QMainWindow::event
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