You have to specify an output directory with -targ and the runs you want
to unpack with -run. See the help (ie, run dcmunpack with -help)

On 11/07/2018 05:38 PM, Maryam Tayebi wrote:
>
>         External Email - Use Caution
>
> Hello Freesurfer Developers,
> I was going to reconstruct MPRAGE images from GE 3T machine.
> First I used this command:
> /dcmunpack -src . -scanonly scan.log/
>
> It made just /scan.log/ file for me. Then I used this command:
> /unpacksdcmdir -src /<my dicoms pathways> -targ <my output directory>
> -scanonly scan.log/
>
> However, it made 3 files for me; dicomdir.sumfile, parse.status and
> unpack.log, but they were 0 bites. Furthermore, the following message
> also appeared on the terminal:
>
> /ERROR: parsing /hpc/mtay316/tutorial4/practice_with_data/dicoms/
> See logfile /hpc/mtay316/tutorial4/practice_with_data//unpack.log for
> more details/
>
> I used this command for SIEMENS data and it worked. Apparently this
> code just works on SIEMENS data not GE. So now what is the code that I
> can use for GE dcm images?
>
> 1) FREESURFER Version:
> freesurfer-x86_64-unknown-linux-gnu-stable6-20170118
> 2) Platform: Ubuntu 16.04 LTS
> 3) unpack.log : see attached
>
> Regards
>
>
> --
> *Maryam Tayebi*
>
> PhD Candidate of Bioengineering
> Auckland Bioengineering Institute, University of Auckland, Auckland,
> New Zealand
>
>
>
> MSc of Medical Imaging
> University of Manchester, Manchester, UK
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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