Hi all,
Just wondering if the scan orientation for input DICOMs matter. 
I know that Analyze format does not preserve left/right orientation information, but would a saggital DICOM scan have the same problem?
We have a lot of axial scans, would incorporating freesurfer subjects with saggital scans in our comparisons cause any problems?
 Assuming that the slice thickness is 1mm with 0 spacing at 3T, with 256x256 res. 
We are using GE Signa HDx scanners.

Thanks

- David Qixiang Chen