External Email - Use Caution        

-----原始邮件-----
发件人:"Douglas N. Greve" <dgreve@MGH.HARVARD.EDU>
发送时间:2020-09-29 23:07:46 (星期二)
收件人: freesurfer@nmr.mgh.harvard.edu
抄送:
主题: Re: [Freesurfer] extract morphology data

This is a bug. Try this
cd $SUBJECTS_DIR/sub1/surf
ln -s lh.sphere.reg lh.fsaverage5.sphere.reg
ln -s rh.sphere.reg rh.fsaverage5.sphere.reg

On 9/28/2020 3:55 AM, 姜黎黎 wrote:

        External Email - Use Caution        

Hello,

my command line is

mris_preproc --s ${subject} --hemi ${hemi} --meas ${measure} --target ${fsaverage}5 --out ${measure}/${hemi}.${subject}.${fsaverage}5.sm0.mgz

and my terminal output is

Transfering area for sub1's lh hemisphere ...
nsubjects = 1
INFO: turning on jacobican correction
tmpdir is area/tmp.mris_preproc.4084
Log file is area/lh.sub1.fsaverage5.sm0.mris_preproc.log
~/Downloads/freesurfer/bin/mris_preproc --s sub1 --hemi lh --meas area --target fsaverage5 --out area/lh.sub1.fsaverage5.sm0.mgz

Linux localhost.localdomain 2.6.32-754.17.1.el6.x86_64 #1 SMP Tue Jul 2 12:42:48 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
$Id: mris_preproc,v 1.76.2.1 2016/08/12 17:55:45 zkaufman Exp $
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
tmpdir is area/tmp.mris_preproc.4084
Src lh fsaverage5.sphere.reg
Trg lh sphere.reg

mri_surf2surf --srcsubject sub1 --srchemi lh --srcsurfreg fsaverage5.sphere.reg --trgsubject fsaverage5 --trghemi lh --trgsurfreg sphere.reg --tval area/tmp.mris_preproc.4162/sub1.1.mgh --sval /sub1/surf/lh.area --jac --sfmt curv --noreshape --cortex
MRISread(/sub1/surf/lh.fsaverage5.sphere.reg): could not open file
Source registration surface changed to fsaverage5.sphere.reg
Target registration surface changed to sphere.reg

$Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $

mri_surf2surf --srcsubject sub1 --srchemi lh --srcsurfreg fsaverage5.sphere.reg --trgsubject fsaverage5 --trghemi lh --trgsurfreg sphere.reg --tval area/tmp.mris_preproc.4084/sub1.1.mgh --sval /sub1/surf/lh.area --jac --sfmt curv --noreshape --cortex

sysname  Linux
hostname localhost.localdomain
machine  x86_64
srcsubject = sub1
srcval     = /sub1/surf/lh.area
srctype    = curv
trgsubject = fsaverage5
trgval     = area/tmp.mris_preproc.4084/sub1.1.mgh
trgtype    =
srcsurfreg = fsaverage5.sphere.reg
trgsurfreg = sphere.reg
srchemi    = lh
trghemi    = lh
frame      = 0
fwhm-in    = 0
fwhm-out   = 0
label-src  = lh.cortex.label
label-trg  = lh.cortex.label
OKToRevFaceOrder  = 1
UseDualHemi = 0
Reading source surface reg /sub1/surf/lh.fsaverage5.sphere.reg
No such file or directory
mri_surf2surf: could not read surface /sub1/surf/lh.fsaverage5.sphere.reg
No such file or directory

Appreciated for your help!

Lili

_______________________________________________
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer