setenv SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS
set dtroot = /mnt/glusterfs/salsoman/output/TRACULA
set runlist= (1)
set dcmroot = /mnt/glusterfs/salsoman/SRC
set nb0 = 10
set dob0 = 0
set doeddy = 1
set dorotbvecs = 1
set thrbet = 0.5
set doregflt = 0
set doregbbr = 1
set doregmni = 1
set mnitemp = /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz
set doregcvs = 0
set usemaskanat = 1
set pathlist = ( lh.cst_AS rh.cst_AS \
                 lh.unc_AS rh.unc_AS \
                 lh.ilf_AS rh.ilf_AS \
                 fmajor_PP fminor_PP \
                 lh.atr_PP rh.atr_PP \
                 lh.ccg_PP rh.ccg_PP \
                 lh.cab_PP rh.cab_PP \
                 lh.slfp_PP rh.slfp_PP \
                 lh.slft_PP rh.slft_PP )
set ncpts = (6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5)
set trainfile = $FREESURFER_HOME/trctrain/trainlist.txt
set nstick = 2
set nburnin = 200
set nsample = 5000
set nkeep = 5
set reinit = 0
set subjlist = (Test_FS)
set dcmlist = (Test/DTI/iso_dti_combined.nii.gz)
set bvecfile = /mnt/glusterfs/salsoman/SRC/Test/DTI/Comb_bvecs.txt
set bvalfile = /mnt/glusterfs/salsoman/SRC/Test/DTI/Comb_bvals.txt