Thu Mar 28 14:28:13 PDT 2013 /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 /mnt/glusterfs/salsoman/freesurfer/bin/trac-all -prep -no-isrunning -c /mnt/glusterfs/salsoman/SRC/Test/DTI/dmrirc Subject Test_FS SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer Actual FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 salsoman barley09.stanford.edu Linux barley09.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 772831 maxlocks unlimited maxsignal 772831 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 99005808 41989188 57016620 0 620328 35407244 -/+ buffers/cache: 5961616 93044192 Swap: 10485756 61604 10424152 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:28:13-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.2 2013/02/23 01:32:22 mreuter Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:28:14-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:28:14-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:28:15-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:28:15-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc salsoman barley09.stanford.edu Linux barley09.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 772831 maxlocks unlimited maxsignal 772831 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 99005808 41991080 57014728 0 620328 35407232 -/+ buffers/cache: 5963520 93042288 Swap: 10485756 61604 10424152 #------------------------------------- /mnt/glusterfs/salsoman/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Thu Mar 28 14:28:16 PDT 2013 mri_convert /mnt/glusterfs/salsoman/SRC/Test/DTI/iso_dti_combined.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.nii.gz mri_convert /mnt/glusterfs/salsoman/SRC/Test/DTI/iso_dti_combined.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /mnt/glusterfs/salsoman/SRC/Test/DTI/iso_dti_combined.nii.gz... TR=6600.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999894, -0.0145266, -3.53741e-13) j_ras = (-0.0145268, 0.999843, -0.0101626) k_ras = (-0.000147628, 0.0101615, 0.999948) writing to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.nii.gz... cp /mnt/glusterfs/salsoman/SRC/Test/DTI/Comb_bvecs.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.mghdti.bvecs cp /mnt/glusterfs/salsoman/SRC/Test/DTI/Comb_bvals.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.mghdti.bvals flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -15.625 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.nii.gz x y z /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig_flip.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig_flip.nii.gz INFO: found /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig_flip.mghdti.bvecs /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs mv -f /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig_flip.mghdti.bvals /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals eddy_correct /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_orig_flip.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz 0 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0000 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0001 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0002 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0003 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0004 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0005 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0006 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0007 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0008 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0009 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0010 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0011 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0012 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0013 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0014 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0015 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0016 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0017 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0018 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0019 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0020 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0021 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0022 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0023 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0024 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0025 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0026 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0027 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0028 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0029 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0030 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0031 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0032 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0033 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0034 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0035 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0036 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0037 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0038 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0039 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0040 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0041 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0042 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0043 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0044 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0045 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0046 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0047 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0048 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0049 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0050 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0051 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0052 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0053 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0054 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0055 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0056 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0057 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0058 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0059 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0060 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0061 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0062 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0063 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0064 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0065 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0066 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0067 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0068 processing /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_tmp0069 mv -f /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs.norot xfmrot /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.ecclog /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs.norot /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs ln -sf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/data.nii.gz fslroi /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/lowb.nii.gz 0 10 fslmaths /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/lowb.nii.gz -Tmean /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/lowb.nii.gz bet /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/lowb.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/lowb_brain.nii.gz -m -f 0.5 mv -f /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/lowb_brain_mask.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff #------------------------------------- #@# Intra-subject registration Thu Mar 28 14:37:25 PDT 2013 mri_convert /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/brain.mgz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz mri_convert /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/brain.mgz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/brain.mgz... TR=7.30, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -4.47035e-08, 9.15024e-08) j_ras = (-6.75209e-08, -4.40923e-09, -1) k_ras = (4.09782e-08, 1, 2.73576e-09) writing to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz... flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz tkregister2 --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz --targ /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2anat.mat --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2anatorig.dat tkregister_tcl /mnt/glusterfs/salsoman/freesurfer/tktools/tkregister2.tcl target volume /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz movable volume /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz reg file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 -0.000 -0.000 -0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 -0.000 -0.000 -0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 -0.000; 0.000 0.000 -1.000 0.000; 0.000 1.000 -0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2anatorig.mat -inverse /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2anat.mat Log file is /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat.log Thu Mar 28 14:37:31 PDT 2013 setenv SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS cd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 /mnt/glusterfs/salsoman/freesurfer/bin/bbregister --s Test_FS --init-fsl --dti --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat --fslmat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.49.2.2 2013/02/23 01:32:22 mreuter Exp $ Linux barley09.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer mri_convert /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii mri_convert /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999894, -0.0145266, -3.53741e-13) j_ras = (-0.0145268, 0.999843, -0.0101626) k_ras = (-0.000147628, 0.0101615, 0.999948) writing to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii... fslregister --s Test_FS --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister --dof 6 --fsvol brainmask Log file is /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat.fslregister.log Thu Mar 28 14:37:40 PDT 2013 --s Test_FS --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat --niters 1 --maxangle 90 --nobetmov --tmp /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister --dof 6 --fsvol brainmask $Id: fslregister,v 1.34.2.2 2012/11/08 16:18:56 greve Exp $ barley09.stanford.edu Linux barley09.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 mri_convert ERROR: could not determine file for /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/ERROR: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister.nii mri_convert ERROR: could not determine file for /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/ERROR: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister.nii mri_convert: extra arguments ("not" and following) type mri_convert -u for usage -------------------------------------- /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 mri_convert /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii --frame 0 mri_convert /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999894, -0.0145266, -3.53741e-13) j_ras = (-0.0145268, 0.999843, -0.0101626) k_ras = (-0.000147628, 0.0101615, 0.999948) keeping frame 0 writing to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii... Mov determinant is -15.625 /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 tkregister2_cmdl --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/reg0.23428.dat --regheader --fslregout /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat.fsl.mat0 --s Test_FS --noedit tkregister_tcl /mnt/glusterfs/salsoman/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii reg file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/reg0.23428.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 INFO: loading target /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.500 0.000 0.000 120.000; 0.000 0.000 2.500 -71.250; 0.000 -2.500 0.000 120.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.015 0.000 1.356; -0.000 0.010 1.000 -39.095; 0.015 -1.000 0.010 -7.425; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.015 0.000 1.356; -0.000 0.010 1.000 -39.095; 0.015 -1.000 0.010 -7.425; 0.000 0.000 0.000 1.000; Determinant 1 subject = Test_FS RegMat --------------------------- 1.000 0.015 0.000 1.356; -0.000 0.010 1.000 -39.095; 0.015 -1.000 0.010 -7.425; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -15.625, ref det = -1 Thu Mar 28 14:37:50 PDT 2013 /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 flirt.fsl -ref /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister.nii -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/fslmat0.trans.mat -schedule /mnt/glusterfs/salsoman/fsl/etc/flirtsch/xyztrans.sch -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat.fsl.mat0 ** ERROR (nifti_image_read): failed to find header file for '/mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister' ** ERROR: nifti_image_open(/mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister): bad header info ERROR: failed to open file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister ERROR: Could not open image /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister Image Exception : #22 :: Failed to read volume /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister.nii terminate called after throwing an instance of 'RBD_COMMON::BaseException' Abort (core dumped) Thu Mar 28 14:37:50 PDT 2013 /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 flirt.fsl -ref /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister.nii -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat.fsl.mat -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/fslmat0.trans.mat -schedule /mnt/glusterfs/salsoman/freesurfer/bin/flirt.newdefault.20080811.sch ** ERROR (nifti_image_read): failed to find header file for '/mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister' ** ERROR: nifti_image_open(/mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister): bad header info ERROR: failed to open file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister ERROR: Could not open image /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister Image Exception : #22 :: Failed to read volume /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/fslregister/refvol.fslregister.nii terminate called after throwing an instance of 'RBD_COMMON::BaseException' Abort (core dumped) tkregister2_cmdl --s Test_FS --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat --fslreg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat.fsl.mat --noedit tkregister_tcl /mnt/glusterfs/salsoman/freesurfer/tktools/tkregister2.tcl ERROR: cannot open /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat.fsl.mat cat: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat: No such file or directory tmp: Subscript out of range. Started at Thu Mar 28 14:37:40 PDT 2013 Ended at Thu Mar 28 14:37:51 PDT 2013 fslregister Done To check results, run: tkregister2 --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat --surf orig mri_segreg --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii --init-reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat --out-reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 regio_read_register(): No such file or directory Could not open /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.init.dat mri_segreg --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/template.nii --init-reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/bbr.pass1.dat --out-reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 regio_read_register(): No such file or directory Could not open /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/tmp.bbregister.23392/bbr.pass1.dat tkregister2_cmdl --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2anatorig.bbr.mat regio_read_register(): No such file or directory Could not open /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat tkregister_tcl /mnt/glusterfs/salsoman/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz reg file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ Diagnostic Level -1 ERROR: reading /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat Cleaning up Started at Thu Mar 28 14:37:31 PDT 2013 Ended at Thu Mar 28 14:37:52 PDT 2013 BBR-Run-Time-Sec 21 bbregister Done To check results, run: tkregister2 --mov /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.mat -inverse /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2anatorig.bbr.mat Could not open matrix file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2anatorig.bbr.mat Cannot read input-matrix convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2diff.bbr.mat -concat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.mat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2anatorig.mat Could not open matrix file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2diff.bbr.mat Cannot read concat-matrix convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2anat.bbr.mat -inverse /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2diff.bbr.mat Could not open matrix file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2diff.bbr.mat Cannot read input-matrix #------------------------------------- #@# Inter-subject registration Thu Mar 28 14:37:52 PDT 2013 flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/brain_anat_mni.nii.gz -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/mni2anat.mat -inverse /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2mni.mat -concat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2anat.mat convert_xfm -omat /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/mni2anatorig.mat -inverse /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Thu Mar 28 14:41:54 PDT 2013 mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman input /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 Found 444852 values in range Counting number of voxels Found 444852 voxels in final mask mri_binarize done mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman input /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 Found 472558 values in range Counting number of voxels Found 472558 voxels in final mask mri_binarize done mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman input /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 Found 18091 values in range Counting number of voxels Found 18091 voxels in final mask mri_binarize done mri_aparc2aseg --s Test_FS --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS subject Test_FS outvol /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /mnt/glusterfs/salsoman/output/FS/Test_FS/surf/lh.white Reading lh pial surface /mnt/glusterfs/salsoman/output/FS/Test_FS/surf/lh.pial Loading lh annotations from /mnt/glusterfs/salsoman/output/FS/Test_FS/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /mnt/glusterfs/salsoman/output/FS/Test_FS/surf/rh.white Reading rh pial surface /mnt/glusterfs/salsoman/output/FS/Test_FS/surf/rh.pial Loading rh annotations from /mnt/glusterfs/salsoman/output/FS/Test_FS/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/ribbon.mgz Loading filled from /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 927439 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 2 clusters 0 k 713.000000 1 k 1.000000 Fixing Parahip RH WM Found 2 clusters 0 k 2.000000 1 k 903.000000 Writing output aseg to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline mri_binarize --i /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex.nii.gz sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman input /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 Found 511031 values in range Counting number of voxels Found 511031 voxels in final mask mri_binarize done mri_binarize --i /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline mri_binarize --i /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman input /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 Found 761448 values in range Counting number of voxels Found 761448 voxels in final mask mri_binarize done mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 16 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline mri_binarize --i /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz --match 16 --o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman input /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 Found 20997 values in range Counting number of voxels Found 20997 voxels in final mask mri_binarize done fslmaths /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm.nii.gz -add /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/Brain-Stem.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/brainmask.mgz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/brainmask.mgz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/brainmask.mgz... TR=7.30, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -4.47035e-08, 9.15024e-08) j_ras = (-6.75209e-08, -4.40923e-09, -1) k_ras = (4.09782e-08, 1, 2.73576e-09) writing to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask.nii.gz -mul /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/notventricles.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /mnt/glusterfs/salsoman/output/FS/Test_FS/mri/aparc+aseg.mgz... TR=7.30, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, -4.47035e-08, 9.15024e-08) j_ras = (-6.75209e-08, -4.40923e-09, -1) k_ras = (4.09782e-08, 1, 2.73576e-09) writing to /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/White-Matter.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter++.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/White-Matter++.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter++.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/White-Matter++.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/notventricles.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/notventricles.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/notventricles.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/notventricles.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/notventricles.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/cortex.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm+bs.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/cortex+2mm+bs.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg_mask.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/aparc+aseg_mask.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask-vent.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /mnt/glusterfs/salsoman/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz -k /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/White-Matter++.flt.nii.gz -m -s | awk '{print $1/$2}' > /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi_snr.txt Image Exception : #22 :: ERROR: Could not open image /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/White-Matter++.flt ln -sf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Thu Mar 28 14:50:56 PDT 2013 dtifit -k /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz -m /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz -r /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs -b /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals -o /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dtifit 0 96 0 96 0 57 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed #------------------------------------- #@# Priors Thu Mar 28 14:51:05 PDT 2013 /mnt/glusterfs/salsoman/freesurfer/bin/dmri_train --outdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.Test_FS.20535.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg_mask.nii.gz --fa /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dtifit_FA.nii.gz --cptdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 cmdline /mnt/glusterfs/salsoman/freesurfer/bin/dmri_train --outdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.Test_FS.20535.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg_mask.nii.gz --fa /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dtifit_FA.nii.gz --cptdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname barley09.stanford.edu machine x86_64 user salsoman Output directory: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni Output directory in test subject's space: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.Test_FS.20535.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dtifit_FA.nii.gz ERROR: Could not open /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/mni2diff.bbr.mat #------------------------------------- trac-preproc finished without error at Thu Mar 28 14:51:06 PDT 2013 New invocation of trac-all Thu Mar 28 14:51:07 PDT 2013 /mnt/glusterfs/salsoman/SRC/WCA_0160_T1 /mnt/glusterfs/salsoman/freesurfer/bin/trac-all -bedp -no-isrunning -c /mnt/glusterfs/salsoman/SRC/Test/DTI/dmrirc Subject Test_FS SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer Actual FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 salsoman barley09.stanford.edu Linux barley09.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 772831 maxlocks unlimited maxsignal 772831 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 99005808 42364584 56641224 0 620456 35788680 -/+ buffers/cache: 5955448 93050360 Swap: 10485756 61600 10424156 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:51:07-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.2 2013/02/23 01:32:22 mreuter Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:51:08-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:51:08-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:51:10-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-21:51:10-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley09.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri subjectdir is /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri Making bedpostx directory structure Queuing preprocessing stages Queuing parallel processing stage Queuing post processing stage Type /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX/monitor to show progress. Type /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX/cancel to terminate all the queued tasks. You will get an email at the end of the post-processing stage. New invocation of trac-all Thu Mar 28 15:50:13 PDT 2013 /mnt/glusterfs/salsoman/SRC/Test /mnt/glusterfs/salsoman/freesurfer/bin/trac-all -path -no-isrunning -c /mnt/glusterfs/salsoman/SRC/Test/DTI/dmrirc Subject Test_FS SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer Actual FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 salsoman barley07.stanford.edu Linux barley07.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 772831 maxlocks unlimited maxsignal 772831 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 99005808 28304680 70701128 0 648988 21049792 -/+ buffers/cache: 6605900 92399908 Swap: 10485756 0 10485756 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-22:50:14-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: salsoman Machine: barley07.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.2 2013/02/23 01:32:22 mreuter Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-22:50:14-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley07.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-22:50:14-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley07.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-22:50:14-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley07.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-22:50:15-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: barley07.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths salsoman barley07.stanford.edu Linux barley07.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 772831 maxlocks unlimited maxsignal 772831 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 99005808 28309028 70696780 0 648988 21049636 -/+ buffers/cache: 6610404 92395404 Swap: 10485756 0 10485756 #------------------------------------- /mnt/glusterfs/salsoman/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Thu Mar 28 15:50:15 PDT 2013 rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/freesurfer/bin/dmri_paths --outdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr --dwi /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --grad /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs --bval /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals --mask /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2mni.bbr.mat --init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 --sdp /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /mnt/glusterfs/salsoman/SRC/Test cmdline /mnt/glusterfs/salsoman/freesurfer/bin/dmri_paths --outdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr --dwi /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --grad /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs --bval /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals --mask /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2mni.bbr.mat --init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all 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/mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all 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/mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 --sdp /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname barley07.stanford.edu machine x86_64 user salsoman Output directory: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz Gradients: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs B-values: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals Mask: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 5000 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz Loading mask from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX Loading b-values from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals Loading gradients from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 108046 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz New invocation of trac-all Thu Mar 28 16:07:19 PDT 2013 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS /mnt/glusterfs/salsoman/freesurfer/bin/trac-all -path -no-isrunning -c /mnt/glusterfs/salsoman/SRC/Test/DTI/dmrirc Subject Test_FS SUBJECTS_DIR /mnt/glusterfs/salsoman/output/FS FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer Actual FREESURFER_HOME /mnt/glusterfs/salsoman/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.2.0 salsoman corn05.stanford.edu Linux corn05.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 256 maxlocks unlimited maxsignal 256767 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 32949884 24442212 8507672 0 652328 20284276 -/+ buffers/cache: 3505608 29444276 Swap: 10485756 5023404 5462352 ######################################## Program versions: $Id: trac-all,v 1.22.2.12 2013/02/23 02:01:02 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-23:07:19-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: salsoman Machine: corn05.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.49.2.2 2013/02/23 01:32:22 mreuter Exp $ $Id: mri_cvs_register,v 1.15.2.12 2013/02/09 00:37:37 nicks Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-23:07:20-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: corn05.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-23:07:20-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: corn05.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-23:07:20-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: corn05.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/03/28-23:07:20-GMT BuildTimeStamp: Feb 26 2013 00:28:02 CVS: User: salsoman Machine: corn05.stanford.edu Platform: Linux PlatformVersion: 3.2.0-33-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths salsoman corn05.stanford.edu Linux corn05.stanford.edu 3.2.0-33-generic #52-Ubuntu SMP Thu Oct 18 16:29:15 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 256 maxlocks unlimited maxsignal 256767 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 32949884 24463824 8486060 0 652328 20303576 -/+ buffers/cache: 3507920 29441964 Swap: 10485756 5023400 5462356 #------------------------------------- /mnt/glusterfs/salsoman/freesurfer/bin/trac-paths #------------------------------------- #@# Path reconstruction Thu Mar 28 16:07:21 PDT 2013 rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/freesurfer/bin/dmri_paths --outdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr --dwi /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --grad /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs --bval /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals --mask /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2mni.bbr.mat --init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 --sdp /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /mnt/glusterfs/salsoman/output/TRACULA/Test_FS cmdline /mnt/glusterfs/salsoman/freesurfer/bin/dmri_paths --outdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr --dwi /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz --grad /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs --bval /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals --mask /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz --bpdir /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2mni.bbr.mat --init /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 --sdp /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname corn05.stanford.edu machine x86_64 user salsoman Output directory: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cst_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.unc_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ilf_AS_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fmajor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/fminor_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.atr_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.ccg_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.cab_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slfp_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/lh.slft_PP_avg33_mni_bbr /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz Gradients: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs B-values: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals Mask: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz BEDPOST directory: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 5000 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/dwi.nii.gz Loading mask from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/diff/lowb_brain_mask.nii.gz Loading BEDPOST parameter samples from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri.bedpostX Loading b-values from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvals Loading gradients from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 108046 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz niiRead(): error opening file /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz ERROR: Could not read /mnt/glusterfs/salsoman/output/TRACULA/Test_FS/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz