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What do you recommend should I use dcm2nixx or use mri_concat in order to deal with multi frame t1 mri?

Knut j Bjuland

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On 25 Feb 2022, at 19:47, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

I'm not sure what question you are asking

On 2/25/2022 1:17 PM, Knut J Bjuland wrote:
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Dear Freesurfer experts,

I get this error when I am running FreeSurfer.

Checking for (invalid) multi-frame inputs...
ERROR: input(s) cannot have multiple frames!
/home/knutjb/subjects/test/mri/orig/001.mgz has 4 frames
If this is a multi-frame MEMPRAGE image,
use mri_concat --rms to combine echo frames.

It has a t1_sag_mprage sequence, and it also give this waning

filesare not found to be different and cannot be sorted.

In addition, I get these errors when importing using recon-all -i file -all -s test

INFO: Found 770 files in //20210224_151919/5_t1_sag_mprage
INFO: Scanning for Series Number 5
Scanning Directory
INFO: found 768 files in series
INFO: loading series header info.

When I am running mri_concat --rms I am able to run recon-all -all.

Your sincerely,

Knut Jørgen Bjuland
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