Hi,


To create the surface, I have to define the corpus callosum and the
pons as well. I have been suggested to get a talairach transform
first, so I did:

(22970 is the subject folder)


$ talairach 22970


but I have received this message:


<color><param>FFFF,0000,0000</param>wpark% talairach 22970

registering 22970

mri_convert orig orig/orig.mnc 

reading from orig...

TR=0.00, TE=0.00, TI=0.00, flip angle=0.00

i_ras = (-1, 0, 0)

j_ras = (0, 0, -1)

k_ras = (0, 1, 0)

writing to orig/orig.mnc...

Can't locate Getopt/Tabular.pm in @INC (@INC contains:
/usr/local/mni/lib/mni_autoreg
/System/Library/Perl/5.8.1/darwin-thread-multi-2level
/System/Library/Perl/5.8.1
/Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1
/Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level
/Network/Library/Perl/5.8.1 /Network/Library/Perl .) at
/usr/pubsw/packages/mni/bin/mritotal line 56.

BEGIN failed--compilation aborted at
/usr/pubsw/packages/mni/bin/mritotal line 56.

Error:  could not open file
"/usr/local/freesurfer_package/freesurfer/subjects/22970/mri/transforms/talairach.xfm".  

System message: No such file or directory

mri_add_xform_to_header: could not read xform file
'/usr/local/freesurfer_package/freesurfer/subjects/22970/mri/transforms/talairach.xfm'


No such file or directory

[ogden:freesurfer_package/freesurfer/subjects] wpark% 

</color><color><param>0000,0000,0000</param>

I checked and I have no talairach.xfm under transforms. what should i
do?


The COR-.info file in mri/wm does not have a line beginning with
xform, so I added:


xform
/usr/local/freesurfer_package/freesurfer/subjects/22970/mri/transforms/talaraich.xfm


and ran the talairach 22970 again, but I received the same message.


Thanks!!


Wan</color>