Hi - I need to make a ribbon volume. I have all the necessary surfaces, but I'm lacking an aseg.mgz because the data is monkey. I saw one guy on the list had success by just calling his orig.mgz aseg.mgz. I tried that, and it calculated the left right pial and white distances. Men sadly it segfaulted.
The program mri_ribbon will give me separate left and white gm ribbons. I combined those, coloured them 3 and 42 and did my level best to fill the wm with the right values, but some bits are wrong.
What I'm actually trying to do is use matt glassers myelin mapping in caret. other things could be wrong than my ribbon estimate.
If anyone has an idea how to make a good ribbon without aseg I'd appreciate it. Please bear in mind I may be missing much of what one gets when one runs recon-all. I have thickness, curv, surfaces, filled.mgz, pretesselstion wm.mgz not so much else. The filled.mgz doesn't fill all non cortex the way the bert ribbon does, so it's not that useful.
Thanks,
Colin