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>         Dear freesurfer experts,
>         I want to calculate corrolation between two seeds with
>         freesurfer-linux-centos6_x86_64_stable_pub-v6 .after using
>         fcseed-config and fcseed-sess, I used fcseedcor. the command
>         that I trying to run is as follow:
>         fcseedcor -s subj1 -fsd rest -seed lh-seed2.dat -seed
>         lh-seed3.dat -xreg wm.dat 5 -xreg vcsf.dat 5 -xreg mcprextreg
>         6 -hpf .001 -lpf .1 -nskip 6 -o seedcor2.dat
>         but the output of fcseedcor is not dat file ( the
>         connectivity matrix for my result 2*2 matrix) as it has been
>         explained in the fcssedcor help. the output is just the log
>         file named seedcor2.dat.log. although it has been done
>         without error.
>         I really dont know what is the problem.
>         I would be grateful if you could help me.
>         best regards,
>         sara
 
 
Can? you send the full terminal output?
 
On 12/05/2018 01:25 AM, Sara Jafakesh wrote:
>
> ????????External Email - Use Caution
 
 
Dear Dr.GREVE ,
 
thank you for your reply
 
my full terminal output is:
 
[user at localhost subjects]$ fcseedcor -s subj1 -fsd rest -seed lh-seed2.dat 
-seed lh-seed3.dat -xreg wm.dat 5 -xreg vcsf.dat 5 -xreg mcprextreg 6 -hpf 
.001 -lpf .1 -nskip 6 -o seedcor2.dat
Sat Dec  1 18:05:11 IRST 2018
 
setenv SUBJECTS_DIR /home/user/freesurfer/subjects
cd /home/user/freesurfer/subjects
/home/user/freesurfer/fsfast/bin/fcseedcor -s subj1 -fsd rest -seed 
lh-seed2.dat -seed lh-seed3.dat -xreg wm.dat 5 -xreg vcsf.dat 5 -xreg 
mcprextreg 6 -hpf .001 -lpf .1 -nskip 6 -o seedcor2.dat
 
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
$Id: fcseedcor,v 1.3 2015/12/10 22:51:29 zkaufman Exp $
Linux localhost.localdomain 2.6.32-642.el6.x86_64 #1 SMP Tue May 10 17:27:01 
UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
------- matlab output --------------------
matlab: Command not found.
 
Started at Sat Dec 1 18:05:11 IRST 2018
Ended   at Sat Dec  1 18:05:12 IRST 2018
Fcseedcor-Run-Time-Sec 1
Fcseedcor-Run-Time-Hours 0.00
 
fcseedcor Done
 
best,
sara
 
hi sara, can you include the entire email chain so that I can see the context?
 
On 12/7/18 4:19 PM, Sara Jafakesh wrote:
 
        External Email - Use Caution
 
hi, I send the entire email chain.
thank you,
sara.