2018. 07. 05. (���) 10:45:40 KST /home/kt/Downloads/Thalamus/Outputs/161019_x3DT1_SAG /home/kt/Downloads/freesurferDev/bin/recon-all -i rf161019_x3DT1_SAG.nii -subjid 161019_x3DT1_SAG -all subjid 161019_x3DT1_SAG setenv SUBJECTS_DIR /home/kt/Downloads/Thalamus/Outputs FREESURFER_HOME /home/kt/Downloads/freesurferDev Actual FREESURFER_HOME /home/kt/Downloads/freesurferDev build-stamp.txt: freesurfer-linux-centos7_x86_64-dev-20180703-82d87f8 Linux kt-B85M-DS3H-A 4.4.0-130-generic #156~14.04.1-Ubuntu SMP Thu Jun 14 13:51:47 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 63693 maxlocks unlimited maxsignal 63693 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 16330356 12319988 4010368 362804 361892 6969136 -/+ buffers/cache: 4988960 11341396 Swap: 244141052 72156 244068896 ######################################## program versions used $Id: recon-all,v 1.601 2017/02/08 21:17:33 greve Exp $ $Id: lta_convert.cpp,v 1.10 2016/08/09 02:11:11 zkaufman Exp $ ProgramName: lta_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:41-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: lta_convert.cpp,v 1.10 2016/08/09 02:11:11 zkaufman Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:41-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_annotation2label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:41-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_annotation2label.c,v 1.32 2016/08/02 21:20:27 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_aparc2aseg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:41-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_aparc2aseg.c,v 1.54 2016/12/26 15:29:30 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_aparc2wmseg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:41-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_aparc2wmseg.c,v 1.6 2011/03/02 00:04:13 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_binarize.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 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greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:44-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_label2label.c,v 1.50 2016/12/10 22:57:43 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_label2vol ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:45-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_label2vol.c,v 1.46 2014/12/08 21:11:54 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_log_likelihood ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:45-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: 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00:05:53 Id: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:47-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:47-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_calc.c,v 1.55 2016/09/27 18:50:16 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:47-GMT 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2018 00:05:53 Id: $Id: mris_diff.c,v 1.20 2014/03/21 23:57:48 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_divide_parcellation ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:47-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_divide_parcellation.c,v 1.12 2012/10/24 19:50:06 maritza Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:48-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_segment.c,v 1.44 2016/10/22 17:29:37 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 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mris_left_right_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_left_right_register.c,v 1.2 2011/12/16 20:49:37 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_make_surfaces.c,v 1.172 2017/02/16 19:42:36 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_register.c,v 1.64 2017/02/07 19:04:44 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_sphere.c,v 1.62 2017/02/07 19:04:37 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_surface_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:49-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_surface_stats.c,v 1.10 2011/03/02 00:04:34 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_stats2seg ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_stats2seg.c,v 1.9 2011/03/02 00:04:24 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_thickness ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_thickness.c,v 1.28 2012/11/27 17:41:26 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_thickness_diff ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_thickness_diff.c,v 1.16 2011/03/02 00:04:34 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_surf2surf ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_surf2surf.c,v 1.103 2015/11/05 22:07:33 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_surf2vol ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_surf2vol.c,v 1.28 2014/12/08 19:49:02 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_surfcluster.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:50-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_surfcluster.c,v 1.60 2016/11/01 19:49:22 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mris_volmask ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:51-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mris_volmask.cpp,v 1.28 2016/11/18 19:19:29 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:51-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_tessellate.c,v 1.39 2016/07/20 21:05:04 zkaufman Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_vol2surf ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:51-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_vol2surf.c,v 1.68 2014/05/30 20:58:47 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_vol2vol.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:51-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_vol2vol.c,v 1.89 2016/06/22 22:33:40 fischl Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_voldiff ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:51-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_voldiff.c,v 1.6 2011/03/02 00:04:25 nicks Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:51-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 ProgramName: tkregister2_cmdl ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:52-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: tkregister2.c,v 1.133 2016/08/02 21:17:11 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2018/07/05-01:45:52-GMT BuildTimeStamp: Jul 3 2018 00:05:53 Id: $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ User: kt Machine: kt-B85M-DS3H-A Platform: Linux PlatformVersion: 4.4.0-130-generic CompilerName: GCC CompilerVersion: 40800 FLIRT version 6.0 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /home/kt/Downloads/freesurferDev/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/kt/Downloads/freesurferDev/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /home/kt/Downloads/Thalamus/Outputs/161019_x3DT1_SAG mri_convert /home/kt/Downloads/Thalamus/rf161019_x3DT1_SAG.nii /home/kt/Downloads/Thalamus/Outputs/161019_x3DT1_SAG/mri/orig/001.mgz Could not set locale No such file or directory Could not set locale No such file or directory Could not set locale mri_convert.bin /home/kt/Downloads/Thalamus/rf161019_x3DT1_SAG.nii /home/kt/Downloads/Thalamus/Outputs/161019_x3DT1_SAG/mri/orig/001.mgz error parsing license file, expected 4 values $Id: mri_convert.c,v 1.227 2017/02/16 19:15:42 greve Exp $ reading from /home/kt/Downloads/Thalamus/rf161019_x3DT1_SAG.nii... -------------------------------------------------------------------------- GNU libc version: 2.19 ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: http://surfer.nmr.mgh.harvard.edu/registration.html -------------------------------------------------------------------------- Linux kt-B85M-DS3H-A 4.4.0-130-generic #156~14.04.1-Ubuntu SMP Thu Jun 14 13:51:47 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux recon-all -s 161019_x3DT1_SAG exited with ERRORS at 2018. 07. 05. (���) 10:45:52 KST To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting