I probably shouldn’t say this too loud but, after many delays, I might be close to having a working atlas of the thalamic nuclei that I would like to release in FreeSurfer. Hopefully in a couple of months…

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Yash Patel <ypatel@research.baycrest.org>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, 16 April 2018 at 20:57
To: freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Lateral Geniculate Nucleus (LGN) roi or volume measures?

Hi all, 

Is there any way to obtain (automatically, n~1000 subjects), LGN volumes from the Freesurfer set of tools? 

Or somehow transform the ROI from an atlas into subject space, then extract volume data? 

Thanks, 

Yash