发件人: "邓刊"<310913949@qq.com>;
发送时间: 2019年3月14日(星期四) 上午10:03
收件人: "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu>;
主题: [Freesurfer] 回复： Error with mri_label2label(Segmentation fault(coredumped))
root@zourushi-All-Series:/usr/local/freesurfer/subjects/PT1_4# mri_label2label --srclabel label/4gt.label --s PT1_4 --trglabel 4gtreg.label --hemi rh --paint 30 pial --trgsurf pial
Could not set locale
No such file or directory
Could not set locale
srclabel = label/4gt.label
srcsubject = PT1_4
trgsubject = PT1_4
trglabel = 4gtreg.label
regmethod = surface
srchemi = rh
trghemi = rh
trgsurface = pial
srcsurfreg = sphere.reg
trgsurfreg = sphere.reg
usehash = 1
Use ProjAbs = 0, 0
Use ProjFrac = 0, 0
DoPaint 1
PaintMax 30.000000
SUBJECTS_DIR /usr/local/freesurfer/subjects
FREESURFER_HOME /usr/local/freesurfer
Loading source label.
Found 59455 points in source label.
Starting surface-based mapping
Reading source registration
/usr/local/freesurfer/subjects/PT1_4/surf/rh.sphere.reg
59455 unassigned vertices in label - building spatial LUT...
assigning vertex numbers to label...
/usr/local/freesurfer/bin/mri_label2label: line 3: 4446 Segmentation fault (core dumped) mri_label2label.bin "$@"
------------------ 原始邮件 ------------------
发件人: "Greve, Douglas N.,Ph.D."<DGREVE@mgh.harvard.edu>;
发送时间: 2019年3月13日(星期三) 凌晨0:06
收件人: "freesurfer@nmr.mgh.harvard.edu"<freesurfer@nmr.mgh.harvard.edu>;
主题: Re: [Freesurfer] Error with mri_label2label(Segmentation fault(coredumped))
Can you send the full terminal output?
On 3/12/19 10:36 AM, 310913949 wrote:
External Email - Use Caution
Hi Bruce,
I drawed a 3D ROI on the original image using freeview,and saved it as an label file. Then I wanted to sample it to my subject and to found the closest surface vertices so that I can extract the cortical thickness of ROI. I used the command line:
mri_label2label --srclabel 4gt.label --s PT1_4 --trglabel 4reg.on-pial.label --hemi rh --paint 30 pial --trgsurf pial. But it reported error: Line 3:4445
Segmentation fault(core dumped), mri_label2label.bin "$@".
Can you tell me how to solve this problem?Is it wrong to use the mri_label2label?
Thanks.
Best wishes，
Kan Deng
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