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Hello Knut,

difficult question, since the output looks OK at first sight. Am I correct in assuming that what you’ve posted is the complete output of that script, and that the corresponding output is considerably longer when you run it on the MacBook?

One thing that I would be curious about is if the same observation holds for a different dataset. Maybe give it a try with the LME tutorial dataset and the example analysis? I could do the same here.

Best,

Kersten

Am 25.11.2020 um 15:57 schrieb Knut J Bjuland <knutjorgen@outlook.com>:

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Dear freesurfer experts


When I run lme_mass_fit_Rgw it stop fitting after i have runed 20 % as seen below. I have listed freesurfer matlab toolbox first in the Matlab 2020b path list. I am running on Fedora 33 and the mgh files work when I am running the same script on a macbook.
Are there any step I can take to debug this issues?

Region 4214: Convergence at iteration 9. Initial and final likelihoods: 3004.2484, 3047.3654.
Region 4227: Convergence at iteration 15. Initial and final likelihoods: 2466.513, 2550.6373.
Region 4234: Convergence at iteration 16. Initial and final likelihoods: 2091.6167, 2576.1704.
Region 4247: Convergence at iteration 11. Initial and final likelihoods: 1638.1748, 1830.6099.
Region 4254: Convergence at iteration 11. Initial and final likelihoods: 1963.5263, 2122.7052.
Region 4267: Convergence at iteration 7. Initial and final likelihoods: 1917.7245, 1924.1933.
Region 4274: Convergence at iteration 15. Initial and final likelihoods: 1787.8884, 1895.3745.
Region 4287: Convergence at iteration 6. Initial and final likelihoods: 1935.1202, 1950.6581.
Region 4294: Convergence at iteration 5. Initial and final likelihoods: 2173.2547, 2185.9629.
Region 4307: Convergence at iteration 4. Initial and final likelihoods: 1025.3896, 1058.5496.
Region 4314: Convergence at iteration 13. Initial and final likelihoods: 1209.8828, 1245.91.
Region 4327: Convergence at iteration 26. Initial and final likelihoods: 1132.3554, 1321.7057.
Region 4334: Convergence at iteration 9. Initial and final likelihoods: 1157.4764, 1196.4451.
Region 4347: Convergence at iteration 7. Initial and final likelihoods: 1432.242, 1437.6161.
Region 4354: Convergence at iteration 11. Initial and final likelihoods: 1187.0457, 1282.0549.
Region 4367: Convergence at iteration 8. Initial and final likelihoods: 1340.9078, 1494.0789.
Region 4374: Convergence at iteration 8. Initial and final likelihoods: 1071.3221, 1095.6163.
Region 4387: Convergence at iteration 11. Initial and final likelihoods: 1202.6703, 1227.2202.
Region 4394: Convergence at iteration 9. Initial and final likelihoods: 1067.2966, 1100.0462.
Region 4407: Convergence at iteration 12. Initial and final likelihoods: 1190.4148, 1221.8727.
Region 4414: Convergence at iteration 5. Initial and final likelihoods: 1190.0332, 1193.3426.
Region 4427: Convergence at iteration 10. Initial and final likelihoods: 1295.3867, 1416.8343.
Region 4434: Convergence at iteration 14. Initial and final likelihoods: 1479.4723, 1498.5227.
Region 4447: Convergence at iteration 4. Initial and final likelihoods: 492.8232, 495.8952.
Region 4454: Convergence at iteration 4. Initial and final likelihoods: 345.9289, 350.5215.
Region 4467: Convergence at iteration 4. Initial and final likelihoods: 420.0601, 420.7848.
Region 4474: Convergence at iteration 5. Initial and final likelihoods: 543.539, 554.8185.
Region 4487: Convergence at iteration 4. Initial and final likelihoods: 425.3509, 428.4245.
Region 4494: Convergence at iteration 3. Initial and final likelihoods: 458.8256, 459.5319.
Region 4507: Convergence at iteration 3. Initial and final likelihoods: 372.6527, 373.0735.
Region 4514: Convergence at iteration 5. Initial and final likelihoods: 389.5679, 392.0076.
Aproximate percentage of fitted locations: 100%
Parallel pool using the 'local' profile is shutting down.
  
Summary:
Algorithm did not converge at 0.022139 percent of the total number of regions.
Elapsed time is 3.7353 minutes.
  
Saving output ...


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Kersten Diers
Image Analysis Group (AG Reuter)
German Center for Neurodegenerative Diseases (DZNE) 
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