Dear Woo-Suk,

Thanks for the interest in our work! It seems like you’re looking at the whole-structure volumes from SynthSeg? There should be another text file with all the other volumes.

Also: I would recommend the “simplified” parcellation; it does a better job with the brainstem / midbrain regions…

Cheers,

/Eugenio

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Juan Eugenio Iglesias

http://www.jeiglesias.com

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Woo-Suk Tae <woostae@gmail.com>
Date: Sunday, September 29, 2024 at 23:42
To: Freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] NextBrain with 333 labels

        External Email - Use Caution        

Dear FreeSurfer experts

I tried to segment my brain MRI using NextBrain.in the most recent FreeSurfer-dev package.

I followed the command in MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/HistoAtlasSegmentation, 

but, I got only  the volumes of 101 labels

How can I got the 333 labels and volumes using NextBrain?

my command as follows 

mri_histo_atlas_segment  ../subject/mri/orig.mgz  ..subject/mri/histo_atlas_segmentation/ full 1 -1

Best regards

Woo-Suk Tae

Seoul, Korea

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Woo-Suk, Tae  Ph.D.  Research Professor
Brain Convergence Research Center, 
Korea University College of Medicine, Seoul, Korea
mobile: 82-10-9120-4629
office: 82-2-920-6077
email: woosuk.tae@gmail.com, wstae@korea.ac.kr
woostae@naver.com
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