---------- Forwarded message ----------
From: Paula Diniz <paula.rejane@gmail.com>
Date: 2009/9/17
Subject: Re: [Freesurfer] how to extract segmented hippocampus
To: grojas@computer.org


Hi!
I'm using 3DSlicer. This software can read mgz files without problem. You can see the presentation attached to understand how to do the rendering.

Sincerely,

Paula

2009/9/17 Gonzalo Rojas Costa <grojasy@puc.cl>

Dear Douglas:

 And how can I view (render) in 3D the hippocampus that I got frok aseg.mgz
with the mri_binarize command ?...

 Sincerely,


Gonzalo Rojas Costa


> mri_binarize with --match 17 or --match 53 will do it
>
> doug
>
> Guang Zeng wrote:
>> Hi, there,
>>
>> I'd like to extract the left and right hippocampus from aseg.mgz, so
>> basically what I want is a volume where left hippocampus have value
>> (or label) 17 and right hippocampus have value (or label) 53, all the
>> other place are zero.
>>
>> How can I do it? Using mri_threshold or mri_label2vol?
>>
>> Thanks a lot!
>>
>> Guang
>>
>>
>>
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>>
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>
>--
>Douglas N. Greve, Ph.D.
>MGH-NMR Center
>greve@nmr.mgh.harvard.edu
>Phone Number: 617-724-2358
>Fax: 617-726-7422
>
>In order to help us help you, please follow the steps in:
>surfer.nmr.mgh.harvard.edu/fswiki/BugReporting


_______________________________________________



--
==================================
Paula Rejane Beserra Diniz
Bacharel em Informática Biomédica
Mestre em Neurociências
Doutoranda em Neurociências
Universidade de São Paulo
Hospital das Clínicas - Ribeirão Preto
==================================



--
==================================
Paula Rejane Beserra Diniz
Bacharel em Informática Biomédica
Mestre em Neurociências
Doutoranda em Neurociências
Universidade de São Paulo
Hospital das Clínicas - Ribeirão Preto
==================================