Hi again.

I think I can obtain fdr maps by:
mri_surfcluster --in sig.mgh --subject fsaverage --hemi lh --annot aparc --sign pos --o fdr_005_lh_pos.mgh --fdr 0.05 --cortex --mask mask.mgh 

Can anyone comment if the above command is right to generate a clusterwise fdr corrected p<0.05?

Thanks

Regards

MV




On Fri, Oct 7, 2016 at 1:11 PM, neuroimage analyst <neuroimage.analyst@gmail.com> wrote:

Hi,

I was wondering if there is a way to perform fdr correction using command line in freesurfer without using matlab as mri_glmfit-sim only does bonferroni ?

Thanks
Regards
MV