Hi Mostafa

autorecon2-cp assumes that you have previously run autorecon2. What are you trying to do here? If you just want to run through the end of autrecon2, remove the “-cp” from your command line

cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Mostafa Fakhri
Sent: Saturday, September 3, 2022 6:23 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] problem with autorecon2-cp

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Hi Doug,

Thank You for your response

I have a new problem

I used -autorecon1 and autorecon2-cp:

recon-all -sd /share/users/mfakhri/freeSurfer-analys/subjects -subject fastWM -i /share/users/mfakhri/freeSurfer-analys/100610_7T/T1w.nii.gz -autorecon1 -autorecon2-cp

But process was stopped after half an hour with this error:

$ cat /share/users/mfakhri/freeSurfer-analys/subjects/fastWM/mri/error.log

mghRead(/share/users/mfakhri/freeSurfer-analys/subjects/fastWM/mri/norm.mgz, -1): could not open file

Mostafa