Logfile for mri_cvs_register Wed 14 Dec 20:40:38 GMT 2016 --template SynthF --mov SynthN --outdir CVS $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ stefano-Q170M-C Linux stefano-Q170M-C 4.4.0-53-generic #74-Ubuntu SMP Fri Dec 2 15:59:10 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux asegfname aseg Using m3z type morph files. mris_register -1 -dist 1.0 -inflated /usr/local/freesurfer/subjects/SynthN/surf/lh.sphere /usr/local/freesurfer/subjects/SynthF/surf/lh.sphere /usr/local/freesurfer/subjects/SynthN/surf/lh.cvs.toSynthF.sphere.reg l_dist = 1.000 using inflated surface for initial alignment cwd /mnt/8E74B1C874B1B377/Desktop/Synth_Nick cmdline mris_register -1 -dist 1.0 -inflated /usr/local/freesurfer/subjects/SynthN/surf/lh.sphere /usr/local/freesurfer/subjects/SynthF/surf/lh.sphere /usr/local/freesurfer/subjects/SynthN/surf/lh.cvs.toSynthF.sphere.reg treating target as a single subject's surface... 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.786 2016/11/21 03:01:17 fischl Exp $ reading surface from /usr/local/freesurfer/subjects/SynthN/surf/lh.sphere... reading spherical surface /usr/local/freesurfer/subjects/SynthF/surf/lh.sphere... computing parameterization for surface /usr/local/freesurfer/subjects/SynthF/surf/lh.inflated.H... curvature mean = 0.000, std = 1.000 computing parameterization for surface /usr/local/freesurfer/subjects/SynthF/surf/lh.sulc... computing parameterization for surface /usr/local/freesurfer/subjects/SynthF/surf/lh.smoothwm... curvature mean = -0.000, std = 5.891 curvature mean = -0.028, std = 0.265 MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 528 (210) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=1.000, l_dist=1.000 using quadratic fit line minimization -------------------- 0 Reading lh.inflated.H tol=5.0e-01, sigma=0.0, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=0.333, l_dist=1.000 using quadratic fit line minimization curvature mean = -0.000, std = 1.000 curvature mean = 0.064, std = 0.906 curvature mean = 0.007, std = 0.907 Starting MRISrigidBodyAlignGlobal() d=32.00 min @ (-8.00, 0.00, 8.00) sse = 77795.8, tmin=1.6401 d=16.00 min @ (4.00, 4.00, 4.00) sse = 73999.8, tmin=2.4734 d=8.00 min @ (0.00, 0.00, -2.00) sse = 73618.0, tmin=3.3458 d=4.00 min @ (-1.00, -1.00, 1.00) sse = 73241.2, tmin=4.2242 d=1.00 min @ (0.00, 0.00, -0.25) sse = 73230.5, tmin=5.9596 d=0.50 min @ (0.12, 0.12, 0.00) sse = 73225.1, tmin=6.8107 MRISrigidBodyAlignGlobal() done 6.81 min curvature mean = 0.056, std = 0.966 curvature mean = 0.002, std = 0.959 curvature mean = 0.056, std = 0.987 curvature mean = 0.001, std = 0.984 curvature mean = 0.055, std = 0.994 curvature mean = -0.000, std = 0.994 1 Reading lh.sulc curvature mean = -0.000, std = 6.031 curvature mean = 0.064, std = 0.823 curvature mean = 0.008, std = 0.876 Starting MRISrigidBodyAlignGlobal() d=16.00 min @ (4.00, 0.00, -4.00) sse = 103333.5, tmin=2.0176 d=8.00 min @ (-2.00, 0.00, 0.00) sse = 102908.2, tmin=2.7211 d=4.00 min @ (1.00, 0.00, 0.00) sse = 102586.2, tmin=3.4095 d=2.00 min @ (0.00, 0.00, 0.50) sse = 102529.3, tmin=4.0977 d=1.00 min @ (-0.25, -0.25, -0.25) sse = 102497.0, tmin=4.7754 d=0.50 min @ (0.00, 0.00, 0.12) sse = 102490.5, tmin=5.4654 tol=1.0e+00, sigma=0.5, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=1.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.47 min curvature mean = 0.035, std = 0.919 curvature mean = 0.004, std = 0.950 curvature mean = 0.034, std = 0.952 curvature mean = 0.001, std = 0.980 curvature mean = 0.033, std = 0.964 curvature mean = 0.000, std = 0.991 2 Reading smoothwm curvature mean = -0.026, std = 0.194 curvature mean = 0.080, std = 0.338 curvature mean = 0.038, std = 0.481 curvature mean = 0.073, std = 0.506 curvature mean = 0.017, std = 0.676 curvature mean = 0.071, std = 0.624 curvature mean = 0.008, std = 0.801 curvature mean = 0.070, std = 0.696 curvature mean = 0.002, std = 0.882 MRISregister() return, current seed 0 -01: dt=0.0000, 23 negative triangles 133: dt=0.9900, 23 negative triangles expanding nbhd size to 1 134: dt=0.9900, 37 negative triangles 135: dt=0.9900, 22 negative triangles 136: dt=0.9900, 16 negative triangles 137: dt=0.9900, 17 negative triangles 138: dt=0.9900, 15 negative triangles 139: dt=0.9900, 13 negative triangles 140: dt=0.9900, 10 negative triangles 141: dt=0.9900, 11 negative triangles 142: dt=0.9900, 4 negative triangles 143: dt=0.9900, 7 negative triangles 144: dt=0.9900, 3 negative triangles 145: dt=0.9900, 4 negative triangles 146: dt=0.9900, 4 negative triangles 147: dt=0.9900, 3 negative triangles 148: dt=0.9900, 1 negative triangles 149: dt=0.9900, 4 negative triangles 150: dt=0.9900, 1 negative triangles 151: dt=0.9900, 2 negative triangles 152: dt=0.9900, 1 negative triangles 153: dt=0.9900, 1 negative triangles 154: dt=0.9900, 1 negative triangles 155: dt=0.9900, 1 negative triangles 156: dt=0.9900, 1 negative triangles writing registered surface to /usr/local/freesurfer/subjects/SynthN/surf/lh.cvs.toSynthF.sphere.reg... registration took 0.56 hours mris_register utimesec 2032.060000 mris_register stimesec 0.660000 mris_register ru_maxrss 492252 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 58468 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 0 mris_register ru_oublock 9808 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 38 mris_register ru_nivcsw 12749 FSRUNTIME@ mris_register 0.5648 hours 1 threads mris_register -1 -dist 1.0 -inflated /usr/local/freesurfer/subjects/SynthN/surf/rh.sphere /usr/local/freesurfer/subjects/SynthF/surf/rh.sphere /usr/local/freesurfer/subjects/SynthN/surf/rh.cvs.toSynthF.sphere.reg l_dist = 1.000 using inflated surface for initial alignment cwd /mnt/8E74B1C874B1B377/Desktop/Synth_Nick cmdline mris_register -1 -dist 1.0 -inflated /usr/local/freesurfer/subjects/SynthN/surf/rh.sphere /usr/local/freesurfer/subjects/SynthF/surf/rh.sphere /usr/local/freesurfer/subjects/SynthN/surf/rh.cvs.toSynthF.sphere.reg treating target as a single subject's surface... 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.786 2016/11/21 03:01:17 fischl Exp $ reading surface from /usr/local/freesurfer/subjects/SynthN/surf/rh.sphere... reading spherical surface /usr/local/freesurfer/subjects/SynthF/surf/rh.sphere... computing parameterization for surface /usr/local/freesurfer/subjects/SynthF/surf/rh.inflated.H... curvature mean = -0.000, std = 1.000 computing parameterization for surface /usr/local/freesurfer/subjects/SynthF/surf/rh.sulc... computing parameterization for surface /usr/local/freesurfer/subjects/SynthF/surf/rh.smoothwm... curvature mean = -0.000, std = 5.845 curvature mean = -0.025, std = 0.342 MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 528 (210) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=1.000, l_dist=1.000 using quadratic fit line minimization -------------------- 0 Reading rh.inflated.H tol=5.0e-01, sigma=0.0, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=0.333, l_dist=1.000 using quadratic fit line minimization curvature mean = -0.000, std = 1.000 curvature mean = 0.068, std = 0.890 curvature mean = 0.006, std = 0.918 Starting MRISrigidBodyAlignGlobal() d=32.00 min @ (0.00, -8.00, 0.00) sse = 68002.9, tmin=1.6382 d=16.00 min @ (0.00, 0.00, 4.00) sse = 66077.3, tmin=2.4711 d=8.00 min @ (0.00, 0.00, -2.00) sse = 65271.8, tmin=3.3219 d=4.00 min @ (1.00, 1.00, 1.00) sse = 64740.8, tmin=4.1889 d=2.00 min @ (0.00, -0.50, 0.00) sse = 64738.5, tmin=5.0338 d=1.00 min @ (0.00, 0.25, 0.00) sse = 64706.2, tmin=5.8778 d=0.50 min @ (0.12, 0.12, 0.00) sse = 64705.7, tmin=6.7227 MRISrigidBodyAlignGlobal() done 6.72 min curvature mean = 0.074, std = 0.939 curvature mean = 0.002, std = 0.968 curvature mean = 0.073, std = 0.958 curvature mean = 0.001, std = 0.988 curvature mean = 0.074, std = 0.965 curvature mean = -0.000, std = 0.995 1 Reading rh.sulc curvature mean = -0.000, std = 6.019 curvature mean = 0.071, std = 0.831 curvature mean = 0.012, std = 0.874 Starting MRISrigidBodyAlignGlobal() d=8.00 min @ (-2.00, 0.00, 2.00) sse = 97121.6, tmin=2.6733 d=4.00 min @ (1.00, 1.00, -1.00) sse = 96763.9, tmin=3.3533 d=2.00 min @ (-0.50, -0.50, 0.50) sse = 96667.7, tmin=4.0350 d=1.00 min @ (0.25, 0.00, 0.00) sse = 96636.7, tmin=4.7325 d=0.50 min @ (0.00, 0.12, -0.12) sse = 96625.7, tmin=5.4193 tol=1.0e+00, sigma=0.5, host=stefa, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.100, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=1.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.42 min curvature mean = 0.048, std = 0.917 curvature mean = 0.005, std = 0.945 curvature mean = 0.046, std = 0.949 curvature mean = 0.002, std = 0.977 curvature mean = 0.046, std = 0.961 curvature mean = 0.000, std = 0.990 2 Reading smoothwm curvature mean = -0.027, std = 0.192 curvature mean = 0.061, std = 0.248 curvature mean = 0.046, std = 0.484 curvature mean = 0.058, std = 0.382 curvature mean = 0.020, std = 0.678 curvature mean = 0.056, std = 0.475 curvature mean = 0.010, std = 0.805 curvature mean = 0.055, std = 0.532 curvature mean = 0.003, std = 0.887 MRISregister() return, current seed 0 -01: dt=0.0000, 23 negative triangles 124: dt=0.9900, 23 negative triangles expanding nbhd size to 1 125: dt=0.9900, 32 negative triangles 126: dt=0.9900, 30 negative triangles 127: dt=0.9900, 29 negative triangles 128: dt=0.9900, 23 negative triangles 129: dt=0.9900, 24 negative triangles 130: dt=0.9900, 18 negative triangles 131: dt=0.9900, 16 negative triangles 132: dt=0.9900, 15 negative triangles 133: dt=0.9900, 14 negative triangles 134: dt=0.9900, 12 negative triangles 135: dt=0.9900, 10 negative triangles 136: dt=0.9900, 7 negative triangles 137: dt=0.9900, 5 negative triangles 138: dt=0.9900, 6 negative triangles 139: dt=0.9900, 6 negative triangles 140: dt=0.9900, 2 negative triangles 141: dt=0.9900, 1 negative triangles 142: dt=0.9900, 1 negative triangles writing registered surface to /usr/local/freesurfer/subjects/SynthN/surf/rh.cvs.toSynthF.sphere.reg... registration took 0.54 hours mris_register utimesec 1958.652000 mris_register stimesec 0.916000 mris_register ru_maxrss 487540 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 59300 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 0 mris_register ru_oublock 9848 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 36 mris_register ru_nivcsw 20899 FSRUNTIME@ mris_register 0.5446 hours 1 threads mris_resample --atlas_reg /usr/local/freesurfer/subjects/SynthF/surf/lh.sphere --annot_in /usr/local/freesurfer/subjects/SynthN/label/lh.aparc.annot --annot_out CVS/lh.resample.aparc.annot --subject_surf /usr/local/freesurfer/subjects/SynthN/surf/lh.white --subject_reg /usr/local/freesurfer/subjects/SynthN/surf/lh.cvs.toSynthF.sphere.reg --out CVS/lh.resample.white before reading annotation /usr/local/freesurfer/subjects/SynthN/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) trying to write annotation mris_resample --atlas_reg /usr/local/freesurfer/subjects/SynthF/surf/lh.sphere --annot_in /usr/local/freesurfer/subjects/SynthN/label/lh.aparc.annot --annot_out CVS/lh.resample.aparc.annot --subject_surf /usr/local/freesurfer/subjects/SynthN/surf/lh.pial --subject_reg /usr/local/freesurfer/subjects/SynthN/surf/lh.cvs.toSynthF.sphere.reg --out CVS/lh.resample.pial before reading annotation /usr/local/freesurfer/subjects/SynthN/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) trying to write annotation mris_resample --atlas_reg /usr/local/freesurfer/subjects/SynthF/surf/rh.sphere --annot_in /usr/local/freesurfer/subjects/SynthN/label/rh.aparc.annot --annot_out CVS/rh.resample.aparc.annot --subject_surf /usr/local/freesurfer/subjects/SynthN/surf/rh.white --subject_reg /usr/local/freesurfer/subjects/SynthN/surf/rh.cvs.toSynthF.sphere.reg --out CVS/rh.resample.white before reading annotation /usr/local/freesurfer/subjects/SynthN/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) trying to write annotation mris_resample --atlas_reg /usr/local/freesurfer/subjects/SynthF/surf/rh.sphere --annot_in /usr/local/freesurfer/subjects/SynthN/label/rh.aparc.annot --annot_out CVS/rh.resample.aparc.annot --subject_surf /usr/local/freesurfer/subjects/SynthN/surf/rh.pial --subject_reg /usr/local/freesurfer/subjects/SynthN/surf/rh.cvs.toSynthF.sphere.reg --out CVS/rh.resample.pial before reading annotation /usr/local/freesurfer/subjects/SynthN/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) trying to write annotation mri_cvs_register: Step 1 (spherical registration) took 4010 seconds surf2vol -fixed_mri /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz -moving_mri /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz -fixed_surf /usr/local/freesurfer/subjects/SynthF/surf//lh.white -moving_surf CVS/lh.resample.white -fixed_surf_2 /usr/local/freesurfer/subjects/SynthF/surf//rh.white -moving_surf_2 CVS/rh.resample.white -fixed_surf_3 /usr/local/freesurfer/subjects/SynthF/surf//lh.pial -moving_surf_3 CVS/lh.resample.pial -fixed_surf_4 /usr/local/freesurfer/subjects/SynthF/surf//rh.pial -moving_surf_4 CVS/rh.resample.pial -aparc /usr/local/freesurfer/subjects/SynthF/label//lh.aparc.annot -aparc_2 /usr/local/freesurfer/subjects/SynthF/label//rh.aparc.annot -aparc_3 /usr/local/freesurfer/subjects/SynthF/label//lh.aparc.annot -aparc_4 /usr/local/freesurfer/subjects/SynthF/label//rh.aparc.annot -lin_res 20 -ksp_rtol 1.0e-9 -penalty_weight 1000 -fem_steps 17 -elt_vol_range 5.0,10.0 -topology_old -compress -pc_type jacobi -ksp_type preonly -ksp_view -ksp_converged_reason -poisson .3 -young 1000 -cache_transform CVS/transform.txt -out CVS/el_reg_toSynthF.mgz -out_mesh CVS/el_reg_toSynthF -out_affine CVS/el_reg_toSynthF.affine.mgz No field output option specified will use default value out_field.mgz will cache transform in file CVS/transform.txt reading fixed volume reading moving volume surface name = /usr/local/freesurfer/subjects/SynthF/surf//lh.white type = 0 surface name = /usr/local/freesurfer/subjects/SynthF/surf//rh.white type = 0 surface name = /usr/local/freesurfer/subjects/SynthF/surf//lh.pial type = 1 surface name = /usr/local/freesurfer/subjects/SynthF/surf//rh.pial type = 1 processing APARC reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) label = unknown -> value = 0 label = corpuscallosum -> value = 4 ignored labels = 0 4 reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) label = unknown -> value = 0 label = corpuscallosum -> value = 4 ignored labels = 0 4 reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) label = unknown -> value = 0 label = corpuscallosum -> value = 4 ignored labels = 0 4 reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) label = unknown -> value = 0 label = corpuscallosum -> value = 4 ignored labels = 0 4 surface name = CVS/lh.resample.white type = 0 surface name = CVS/rh.resample.white type = 0 surface name = CVS/lh.resample.pial type = 1 surface name = CVS/rh.resample.pial type = 1 trying to read transform from CVS/transform.txt Error opening file CVS/transform.txt to read transform reading transform failed -> applying Powell energy before calling Powell = 8.41158 fs_powell::minimize nparams 12 maxfev 2000 ftol 0.000000 linmin_xtol_ 0.000100 powell nthiter 0: fret = 8.411583 powell nthiter 1: fret = 7.918161 powell nthiter 2: fret = 7.726387 powell nthiter 3: fret = 7.520001 powell nthiter 4: fret = 7.434089 powell nthiter 5: fret = 7.418712 powell nthiter 6: fret = 7.393699 powell nthiter 7: fret = 7.378137 powell nthiter 8: fret = 7.350709 powell nthiter 9: fret = 7.348232 powell nthiter 10: fret = 7.334772 powell nthiter 11: fret = 7.328216 powell nthiter 12: fret = 7.324626 powell nthiter 13: fret = 7.323799 powell nthiter 14: fret = 7.322133 powell nthiter 15: fret = 7.321325 powell nthiter 16: fret = 7.321061 powell nthiter 17: fret = 7.321006 powell nthiter 18: fret = 7.321003 fs_powell::minimize nparams 12 maxfev 2000 ftol 0.000000 linmin_xtol_ 0.000100 powell nthiter 0: fret = 7.321003 powell nthiter 1: fret = 7.320155 powell nthiter 2: fret = 7.313354 powell nthiter 3: fret = 7.311125 powell nthiter 4: fret = 7.309878 powell nthiter 5: fret = 7.306844 powell nthiter 6: fret = 7.303105 powell nthiter 7: fret = 7.298738 powell nthiter 8: fret = 7.298070 powell nthiter 9: fret = 7.294442 powell nthiter 10: fret = 7.291634 powell nthiter 11: fret = 7.291249 energy after Powell = 7.29125 writing transform to cache file CVS/transform.txt done with Powell applying linear transform to MOVING surf pos. linear transform = 0.99709 0.00981043 -0.0393295 -0.00493243 1.01612 0.06813 0.0230632 -0.064037 0.978155 -1.99899 5.41244 -3.19249 linear transform = 0.99709 0.00981043 -0.0393295 -0.00493243 1.01612 0.06813 0.0230632 -0.064037 0.978155 -1.99899 5.41244 -3.19249 linear transform = 0.99709 0.00981043 -0.0393295 -0.00493243 1.01612 0.06813 0.0230632 -0.064037 0.978155 -1.99899 5.41244 -3.19249 linear transform = 0.99709 0.00981043 -0.0393295 -0.00493243 1.01612 0.06813 0.0230632 -0.064037 0.978155 -1.99899 5.41244 -3.19249 DONE direct min = 52.8522 63.4081 40.182 direct max = 198.691 199.177 219.484 direct min TMP = 55.6478 67.6885 39.54 direct max TMP = 195.772 197.764 214.547 bounding box elts = min = 32.8522 43.4081 20.182 max = 256 256 256 TMP bounding box elts = TMP min = 45.6478 57.6885 29.54 TMP max = 205.772 207.764 224.547 bounding box elts = min = 32.8522 43.4081 20.182 max = 256 256 256 DIRTY value = 1 create BC container - ripCounter = 0 create BC container - ripCounter = 0 create BC container - ripCounter = 0 create BC container - ripCounter = 0 creating container for the mesher writing surface to file lh.dbg_surf.white writing surface to file rh.dbg_surf.white writing surface to file lh.dbg_surf.pial writing surface to file rh.dbg_surf.pial srcPoints size = 0 ====================== step = 17 =============== elt_vol= 10 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000201 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.000813 Removing unwanted tetrahedra. Hole seconds: 1.4e-05 Repairing mesh. Repair seconds: 4.4e-05 Adding Steiner points to enforce quality. Quality seconds: 26.8038 Smoothing mesh. Smooth seconds: 1.43827 Writing nodes. Writing elements. Writing faces. Output seconds: 0.155743 Total running seconds: 28.3989 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 313656 Mesh tetrahedra: 1941837 Mesh faces: 3914135 Mesh subfaces: 60922 Mesh subsegments: 768 mesh nodes = 313656 mesh elts = 1941837 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 InitializeOctantDeterminant count inserted = 100000 elapsed = 0.054 seconds element count = 414120 count inserted = 200000 elapsed = 0.101 seconds element count = 1215215 count inserted = 300000 elapsed = 0.126 seconds element count = 2199869 count inserted = 400000 elapsed = 0.121 seconds element count = 3117437 count inserted = 500000 elapsed = 0.092 seconds element count = 3997702 count inserted = 600000 elapsed = 0.082 seconds element count = 4837623 count inserted = 700000 elapsed = 0.067 seconds element count = 5664569 count inserted = 800000 elapsed = 0.063 seconds element count = 6483108 count inserted = 900000 elapsed = 0.068 seconds element count = 7312875 count inserted = 1000000 elapsed = 0.063 seconds element count = 8133577 count inserted = 1100000 elapsed = 0.057 seconds element count = 8951821 count inserted = 1200000 elapsed = 0.063 seconds element count = 9781626 count inserted = 1300000 elapsed = 0.053 seconds element count = 10610781 count inserted = 1400000 elapsed = 0.056 seconds element count = 11445157 count inserted = 1500000 elapsed = 0.055 seconds element count = 12274219 count inserted = 1600000 elapsed = 0.059 seconds element count = 13107211 count inserted = 1700000 elapsed = 0.055 seconds element count = 13946940 count inserted = 1800000 elapsed = 0.053 seconds element count = 14786577 count inserted = 1900000 elapsed = 0.063 seconds element count = 15629502 done building octree - total elements = 15983411 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 180665 Total BCs = 739644 no-eqs = 940968 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=940968, cols=940968 total: nonzeros=43969218, allocated nonzeros=43969614 using I-node routines: found 313672 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=940968, cols=940968 total: nonzeros=43969218, allocated nonzeros=43969614 using I-node routines: found 313672 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 125119 countInvalid = 0 general-count = 739644 Average of the error norm = 0.135577 Initial error = 0.43047 Average of the error norm conditional = 0.134145 Active Residual error = 0.0327677 Total error = 0.135577 c0324 time elapsed updating the sources (seconds) = 0 NO ORIENTATION PBs FOUND !!! compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 6.96874 Max after displacement = 28.301 Error points = 0 ====================== step = 16 =============== elt_vol= 9.6875 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001185 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.001694 Removing unwanted tetrahedra. Hole seconds: 1.1e-05 Repairing mesh. Repair seconds: 3e-05 Adding Steiner points to enforce quality. Quality seconds: 28.568 Smoothing mesh. Smooth seconds: 1.42411 Writing nodes. Writing elements. Writing faces. Output seconds: 0.132606 Total running seconds: 30.1394 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 323636 Mesh tetrahedra: 2004709 Mesh faces: 4040506 Mesh subfaces: 62176 Mesh subsegments: 768 mesh nodes = 323636 mesh elts = 2004709 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.061 seconds element count = 406563 count inserted = 200000 elapsed = 0.106 seconds element count = 1188063 count inserted = 300000 elapsed = 0.15 seconds element count = 2155887 count inserted = 400000 elapsed = 0.129 seconds element count = 3061910 count inserted = 500000 elapsed = 0.122 seconds element count = 3926992 count inserted = 600000 elapsed = 0.099 seconds element count = 4754169 count inserted = 700000 elapsed = 0.085 seconds element count = 5568105 count inserted = 800000 elapsed = 0.068 seconds element count = 6372153 count inserted = 900000 elapsed = 0.073 seconds element count = 7190255 count inserted = 1000000 elapsed = 0.081 seconds element count = 7997476 count inserted = 1100000 elapsed = 0.055 seconds element count = 8802118 count inserted = 1200000 elapsed = 0.078 seconds element count = 9619500 count inserted = 1300000 elapsed = 0.058 seconds element count = 10430821 count inserted = 1400000 elapsed = 0.058 seconds element count = 11252504 count inserted = 1500000 elapsed = 0.064 seconds element count = 12066218 count inserted = 1600000 elapsed = 0.064 seconds element count = 12882027 count inserted = 1700000 elapsed = 0.072 seconds element count = 13706166 count inserted = 1800000 elapsed = 0.071 seconds element count = 14532909 count inserted = 1900000 elapsed = 0.061 seconds element count = 15359826 count inserted = 2000000 elapsed = 0.067 seconds element count = 16192550 done building octree - total elements = 16231938 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 180745 Total BCs = 739644 no-eqs = 970908 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=970908, cols=970908 total: nonzeros=45381660, allocated nonzeros=45382056 using I-node routines: found 323652 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=970908, cols=970908 total: nonzeros=45381660, allocated nonzeros=45382056 using I-node routines: found 323652 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 127781 countInvalid = 0 general-count = 739644 Average of the error norm = 0.141699 Initial error = 0.435542 Average of the error norm conditional = 0.139849 Active Residual error = 0.034176 Total error = 0.141699 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151205 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 6.62434 Max after displacement = 27.7991 Error points = 0 ====================== step = 15 =============== elt_vol= 9.375 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001062 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.012443 Removing unwanted tetrahedra. Hole seconds: 1.4e-05 Repairing mesh. Repair seconds: 2.9e-05 Adding Steiner points to enforce quality. Quality seconds: 27.454 Smoothing mesh. Smooth seconds: 1.55284 Writing nodes. Writing elements. Writing faces. Output seconds: 0.165399 Total running seconds: 29.1968 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 334055 Mesh tetrahedra: 2070462 Mesh faces: 4172653 Mesh subfaces: 63458 Mesh subsegments: 768 mesh nodes = 334055 mesh elts = 2070462 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.058 seconds element count = 402801 count inserted = 200000 elapsed = 0.1 seconds element count = 1163280 count inserted = 300000 elapsed = 0.119 seconds element count = 2113558 count inserted = 400000 elapsed = 0.098 seconds element count = 3010381 count inserted = 500000 elapsed = 0.1 seconds element count = 3860389 count inserted = 600000 elapsed = 0.081 seconds element count = 4677696 count inserted = 700000 elapsed = 0.078 seconds element count = 5476857 count inserted = 800000 elapsed = 0.085 seconds element count = 6265813 count inserted = 900000 elapsed = 0.075 seconds element count = 7070681 count inserted = 1000000 elapsed = 0.06 seconds element count = 7863867 count inserted = 1100000 elapsed = 0.057 seconds element count = 8652244 count inserted = 1200000 elapsed = 0.059 seconds element count = 9454179 count inserted = 1300000 elapsed = 0.063 seconds element count = 10250355 count inserted = 1400000 elapsed = 0.054 seconds element count = 11056572 count inserted = 1500000 elapsed = 0.059 seconds element count = 11858242 count inserted = 1600000 elapsed = 0.053 seconds element count = 12660405 count inserted = 1700000 elapsed = 0.052 seconds element count = 13470085 count inserted = 1800000 elapsed = 0.051 seconds element count = 14279639 count inserted = 1900000 elapsed = 0.053 seconds element count = 15091526 count inserted = 2000000 elapsed = 0.055 seconds element count = 15905814 done building octree - total elements = 16483672 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 180762 Total BCs = 739644 no-eqs = 1002165 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1002165, cols=1002165 total: nonzeros=46858101, allocated nonzeros=46858479 using I-node routines: found 334071 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1002165, cols=1002165 total: nonzeros=46858101, allocated nonzeros=46858479 using I-node routines: found 334071 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 130857 countInvalid = 0 general-count = 739644 Average of the error norm = 0.14843 Initial error = 0.441618 Average of the error norm conditional = 0.146673 Active Residual error = 0.035847 Total error = 0.14843 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 136650 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 420 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 6.28358 Max after displacement = 27.192 Error points = 0 ====================== step = 14 =============== elt_vol= 9.0625 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.00096 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.015462 Removing unwanted tetrahedra. Hole seconds: 1.3e-05 Repairing mesh. Repair seconds: 3.1e-05 Adding Steiner points to enforce quality. Quality seconds: 28.5619 Smoothing mesh. Smooth seconds: 1.34148 Writing nodes. Writing elements. Writing faces. Output seconds: 0.156193 Total running seconds: 30.0858 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 345337 Mesh tetrahedra: 2140887 Mesh faces: 4314216 Mesh subfaces: 64884 Mesh subsegments: 768 mesh nodes = 345337 mesh elts = 2140887 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.067 seconds element count = 391851 count inserted = 200000 elapsed = 0.094 seconds element count = 1137819 count inserted = 300000 elapsed = 0.115 seconds element count = 2069172 count inserted = 400000 elapsed = 0.122 seconds element count = 2949625 count inserted = 500000 elapsed = 0.086 seconds element count = 3789007 count inserted = 600000 elapsed = 0.087 seconds element count = 4595383 count inserted = 700000 elapsed = 0.077 seconds element count = 5381768 count inserted = 800000 elapsed = 0.07 seconds element count = 6157458 count inserted = 900000 elapsed = 0.076 seconds element count = 6945770 count inserted = 1000000 elapsed = 0.079 seconds element count = 7728007 count inserted = 1100000 elapsed = 0.058 seconds element count = 8505326 count inserted = 1200000 elapsed = 0.061 seconds element count = 9293284 count inserted = 1300000 elapsed = 0.055 seconds element count = 10076324 count inserted = 1400000 elapsed = 0.057 seconds element count = 10864813 count inserted = 1500000 elapsed = 0.059 seconds element count = 11657036 count inserted = 1600000 elapsed = 0.056 seconds element count = 12444539 count inserted = 1700000 elapsed = 0.051 seconds element count = 13235552 count inserted = 1800000 elapsed = 0.051 seconds element count = 14031347 count inserted = 1900000 elapsed = 0.055 seconds element count = 14830315 count inserted = 2000000 elapsed = 0.052 seconds element count = 15626187 count inserted = 2100000 elapsed = 0.058 seconds element count = 16428138 done building octree - total elements = 16756730 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 181450 Total BCs = 739644 no-eqs = 1036011 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1036011, cols=1036011 total: nonzeros=48443181, allocated nonzeros=48443568 using I-node routines: found 345353 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1036011, cols=1036011 total: nonzeros=48443181, allocated nonzeros=48443568 using I-node routines: found 345353 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 136151 countInvalid = 1 general-count = 739643 Average of the error norm = 0.156701 Initial error = 0.448821 Average of the error norm conditional = 0.15475 Active Residual error = 0.0379709 Total error = 0.156707 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160415 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 489 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 197745 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 606 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 5.94694 Max after displacement = 26.5268 Error points = 0 ====================== step = 13 =============== elt_vol= 8.75 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.025741 Removing unwanted tetrahedra. Hole seconds: 1.4e-05 Repairing mesh. Repair seconds: 3e-05 Adding Steiner points to enforce quality. Quality seconds: 29.9341 Smoothing mesh. Smooth seconds: 1.28952 Writing nodes. Writing elements. Writing faces. Output seconds: 0.148416 Total running seconds: 31.4106 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 357430 Mesh tetrahedra: 2217319 Mesh faces: 4467841 Mesh subfaces: 66406 Mesh subsegments: 768 mesh nodes = 357430 mesh elts = 2217319 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.047 seconds element count = 386734 count inserted = 200000 elapsed = 0.076 seconds element count = 1115863 count inserted = 300000 elapsed = 0.098 seconds element count = 2026902 count inserted = 400000 elapsed = 0.084 seconds element count = 2894279 count inserted = 500000 elapsed = 0.086 seconds element count = 3717278 count inserted = 600000 elapsed = 0.072 seconds element count = 4513137 count inserted = 700000 elapsed = 0.063 seconds element count = 5284919 count inserted = 800000 elapsed = 0.056 seconds element count = 6046454 count inserted = 900000 elapsed = 0.065 seconds element count = 6820860 count inserted = 1000000 elapsed = 0.057 seconds element count = 7588872 count inserted = 1100000 elapsed = 0.058 seconds element count = 8355637 count inserted = 1200000 elapsed = 0.065 seconds element count = 9125959 count inserted = 1300000 elapsed = 0.053 seconds element count = 9897046 count inserted = 1400000 elapsed = 0.052 seconds element count = 10670712 count inserted = 1500000 elapsed = 0.052 seconds element count = 11449862 count inserted = 1600000 elapsed = 0.052 seconds element count = 12222978 count inserted = 1700000 elapsed = 0.047 seconds element count = 12996144 count inserted = 1800000 elapsed = 0.064 seconds element count = 13778691 count inserted = 1900000 elapsed = 0.052 seconds element count = 14562964 count inserted = 2000000 elapsed = 0.053 seconds element count = 15346163 count inserted = 2100000 elapsed = 0.052 seconds element count = 16131054 count inserted = 2200000 elapsed = 0.055 seconds element count = 16919223 done building octree - total elements = 17055761 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 182121 Total BCs = 739644 no-eqs = 1072290 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1072290, cols=1072290 total: nonzeros=50159184, allocated nonzeros=50159562 using I-node routines: found 357446 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1072290, cols=1072290 total: nonzeros=50159184, allocated nonzeros=50159562 using I-node routines: found 357446 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 140675 countInvalid = 0 general-count = 739644 Average of the error norm = 0.16609 Initial error = 0.457452 Average of the error norm conditional = 0.163475 Active Residual error = 0.0402538 Total error = 0.16609 c0324 time elapsed updating the sources (seconds) = 0 NO ORIENTATION PBs FOUND !!! compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 5.61327 Max after displacement = 25.8719 Error points = 0 ====================== step = 12 =============== elt_vol= 8.4375 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000957 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.037016 Removing unwanted tetrahedra. Hole seconds: 2.2e-05 Repairing mesh. Repair seconds: 3.3e-05 Adding Steiner points to enforce quality. Quality seconds: 29.4374 Smoothing mesh. Smooth seconds: 1.45149 Writing nodes. Writing elements. Writing faces. Output seconds: 0.160838 Total running seconds: 31.1 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 370271 Mesh tetrahedra: 2297675 Mesh faces: 4629380 Mesh subfaces: 68060 Mesh subsegments: 768 mesh nodes = 370271 mesh elts = 2297675 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.062 seconds element count = 378476 count inserted = 200000 elapsed = 0.085 seconds element count = 1091198 count inserted = 300000 elapsed = 0.108 seconds element count = 1984585 count inserted = 400000 elapsed = 0.087 seconds element count = 2835264 count inserted = 500000 elapsed = 0.08 seconds element count = 3647655 count inserted = 600000 elapsed = 0.093 seconds element count = 4430631 count inserted = 700000 elapsed = 0.079 seconds element count = 5188645 count inserted = 800000 elapsed = 0.08 seconds element count = 5940269 count inserted = 900000 elapsed = 0.081 seconds element count = 6699802 count inserted = 1000000 elapsed = 0.077 seconds element count = 7454776 count inserted = 1100000 elapsed = 0.068 seconds element count = 8208413 count inserted = 1200000 elapsed = 0.068 seconds element count = 8962664 count inserted = 1300000 elapsed = 0.053 seconds element count = 9720118 count inserted = 1400000 elapsed = 0.051 seconds element count = 10480086 count inserted = 1500000 elapsed = 0.053 seconds element count = 11246621 count inserted = 1600000 elapsed = 0.049 seconds element count = 12004133 count inserted = 1700000 elapsed = 0.048 seconds element count = 12762467 count inserted = 1800000 elapsed = 0.056 seconds element count = 13527689 count inserted = 1900000 elapsed = 0.068 seconds element count = 14292400 count inserted = 2000000 elapsed = 0.06 seconds element count = 15065573 count inserted = 2100000 elapsed = 0.049 seconds element count = 15835209 count inserted = 2200000 elapsed = 0.058 seconds element count = 16610601 done building octree - total elements = 17365135 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 182902 Total BCs = 739644 no-eqs = 1110813 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1110813, cols=1110813 total: nonzeros=51967221, allocated nonzeros=51967581 using I-node routines: found 370287 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1110813, cols=1110813 total: nonzeros=51967221, allocated nonzeros=51967581 using I-node routines: found 370287 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 148907 countInvalid = 0 general-count = 739644 Average of the error norm = 0.177941 Initial error = 0.467767 Average of the error norm conditional = 0.175101 Active Residual error = 0.0433015 Total error = 0.177941 c0324 time elapsed updating the sources (seconds) = 0 NO ORIENTATION PBs FOUND !!! compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 5.28424 Max after displacement = 25.2112 Error points = 0 ====================== step = 11 =============== elt_vol= 8.125 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001049 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.04499 Removing unwanted tetrahedra. Hole seconds: 0.000953 Repairing mesh. Repair seconds: 0.000545 Adding Steiner points to enforce quality. Quality seconds: 31.4125 Smoothing mesh. Smooth seconds: 1.60934 Writing nodes. Writing elements. Writing faces. Output seconds: 0.184076 Total running seconds: 33.2661 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 384642 Mesh tetrahedra: 2387760 Mesh faces: 4810436 Mesh subfaces: 69832 Mesh subsegments: 823 mesh nodes = 384642 mesh elts = 2387760 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.043 seconds element count = 370765 count inserted = 200000 elapsed = 0.092 seconds element count = 1063713 count inserted = 300000 elapsed = 0.113 seconds element count = 1936185 count inserted = 400000 elapsed = 0.121 seconds element count = 2776071 count inserted = 500000 elapsed = 0.105 seconds element count = 3574778 count inserted = 600000 elapsed = 0.093 seconds element count = 4344648 count inserted = 700000 elapsed = 0.076 seconds element count = 5087552 count inserted = 800000 elapsed = 0.08 seconds element count = 5824522 count inserted = 900000 elapsed = 0.071 seconds element count = 6568990 count inserted = 1000000 elapsed = 0.054 seconds element count = 7310586 count inserted = 1100000 elapsed = 0.055 seconds element count = 8051963 count inserted = 1200000 elapsed = 0.058 seconds element count = 8789233 count inserted = 1300000 elapsed = 0.071 seconds element count = 9532681 count inserted = 1400000 elapsed = 0.048 seconds element count = 10277024 count inserted = 1500000 elapsed = 0.051 seconds element count = 11028081 count inserted = 1600000 elapsed = 0.048 seconds element count = 11773720 count inserted = 1700000 elapsed = 0.047 seconds element count = 12519009 count inserted = 1800000 elapsed = 0.045 seconds element count = 13265249 count inserted = 1900000 elapsed = 0.049 seconds element count = 14016262 count inserted = 2000000 elapsed = 0.055 seconds element count = 14770495 count inserted = 2100000 elapsed = 0.053 seconds element count = 15523507 count inserted = 2200000 elapsed = 0.056 seconds element count = 16278162 count inserted = 2300000 elapsed = 0.07 seconds element count = 17037625 done building octree - total elements = 17702942 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 183921 Total BCs = 739644 no-eqs = 1153926 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1153926, cols=1153926 total: nonzeros=53992716, allocated nonzeros=53993076 using I-node routines: found 384658 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1153926, cols=1153926 total: nonzeros=53992716, allocated nonzeros=53993076 using I-node routines: found 384658 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 155980 countInvalid = 1 general-count = 739643 Average of the error norm = 0.191025 Initial error = 0.48038 Average of the error norm conditional = 0.18672 Active Residual error = 0.0464331 Total error = 0.191026 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 182367 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172441 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 186372 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 603 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152405 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 4.95733 Max after displacement = 24.6341 Error points = 0 ====================== step = 10 =============== elt_vol= 7.8125 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000928 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.042925 Removing unwanted tetrahedra. Hole seconds: 0.000965 Repairing mesh. Repair seconds: 0.000976 Adding Steiner points to enforce quality. Quality seconds: 31.2485 Smoothing mesh. Smooth seconds: 1.4602 Writing nodes. Writing elements. Writing faces. Output seconds: 0.165237 Total running seconds: 32.9308 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 399850 Mesh tetrahedra: 2484239 Mesh faces: 5004378 Mesh subfaces: 71800 Mesh subsegments: 823 mesh nodes = 399850 mesh elts = 2484239 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.065 seconds element count = 367051 count inserted = 200000 elapsed = 0.1 seconds element count = 1041415 count inserted = 300000 elapsed = 0.134 seconds element count = 1896893 count inserted = 400000 elapsed = 0.108 seconds element count = 2720804 count inserted = 500000 elapsed = 0.078 seconds element count = 3506306 count inserted = 600000 elapsed = 0.066 seconds element count = 4262319 count inserted = 700000 elapsed = 0.063 seconds element count = 4990974 count inserted = 800000 elapsed = 0.058 seconds element count = 5712034 count inserted = 900000 elapsed = 0.058 seconds element count = 6440103 count inserted = 1000000 elapsed = 0.057 seconds element count = 7166930 count inserted = 1100000 elapsed = 0.055 seconds element count = 7890360 count inserted = 1200000 elapsed = 0.056 seconds element count = 8612379 count inserted = 1300000 elapsed = 0.059 seconds element count = 9341894 count inserted = 1400000 elapsed = 0.064 seconds element count = 10068757 count inserted = 1500000 elapsed = 0.068 seconds element count = 10804439 count inserted = 1600000 elapsed = 0.07 seconds element count = 11537691 count inserted = 1700000 elapsed = 0.05 seconds element count = 12269573 count inserted = 1800000 elapsed = 0.045 seconds element count = 12999510 count inserted = 1900000 elapsed = 0.048 seconds element count = 13737192 count inserted = 2000000 elapsed = 0.044 seconds element count = 14473771 count inserted = 2100000 elapsed = 0.048 seconds element count = 15215015 count inserted = 2200000 elapsed = 0.055 seconds element count = 15953738 count inserted = 2300000 elapsed = 0.055 seconds element count = 16692668 count inserted = 2400000 elapsed = 0.05 seconds element count = 17435434 done building octree - total elements = 18063603 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 185558 Total BCs = 739644 no-eqs = 1199550 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1199550, cols=1199550 total: nonzeros=56157576, allocated nonzeros=56157981 using I-node routines: found 399866 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1199550, cols=1199550 total: nonzeros=56157576, allocated nonzeros=56157981 using I-node routines: found 399866 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 164744 countInvalid = 5 general-count = 739639 Average of the error norm = 0.208169 Initial error = 0.495722 Average of the error norm conditional = 0.201419 Active Residual error = 0.0505474 Total error = 0.208234 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 142765 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 432 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156537 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154498 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164289 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156653 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 4.63509 Max after displacement = 24.1736 Error points = 0 ====================== step = 9 =============== elt_vol= 7.5 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000905 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.044181 Removing unwanted tetrahedra. Hole seconds: 0.001854 Repairing mesh. Repair seconds: 0.001237 Adding Steiner points to enforce quality. Quality seconds: 33.2794 Smoothing mesh. Smooth seconds: 1.879 Writing nodes. Writing elements. Writing faces. Output seconds: 0.224757 Total running seconds: 35.4425 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 416122 Mesh tetrahedra: 2587679 Mesh faces: 5212294 Mesh subfaces: 73872 Mesh subsegments: 825 mesh nodes = 416122 mesh elts = 2587679 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.043 seconds element count = 359175 count inserted = 200000 elapsed = 0.07 seconds element count = 1013069 count inserted = 300000 elapsed = 0.091 seconds element count = 1849153 count inserted = 400000 elapsed = 0.09 seconds element count = 2658520 count inserted = 500000 elapsed = 0.09 seconds element count = 3428879 count inserted = 600000 elapsed = 0.093 seconds element count = 4171959 count inserted = 700000 elapsed = 0.059 seconds element count = 4883743 count inserted = 800000 elapsed = 0.056 seconds element count = 5592950 count inserted = 900000 elapsed = 0.054 seconds element count = 6306041 count inserted = 1000000 elapsed = 0.06 seconds element count = 7020923 count inserted = 1100000 elapsed = 0.054 seconds element count = 7731590 count inserted = 1200000 elapsed = 0.065 seconds element count = 8435940 count inserted = 1300000 elapsed = 0.058 seconds element count = 9154798 count inserted = 1400000 elapsed = 0.045 seconds element count = 9864401 count inserted = 1500000 elapsed = 0.049 seconds element count = 10584404 count inserted = 1600000 elapsed = 0.053 seconds element count = 11305391 count inserted = 1700000 elapsed = 0.05 seconds element count = 12020215 count inserted = 1800000 elapsed = 0.049 seconds element count = 12735730 count inserted = 1900000 elapsed = 0.062 seconds element count = 13455263 count inserted = 2000000 elapsed = 0.062 seconds element count = 14177644 count inserted = 2100000 elapsed = 0.061 seconds element count = 14900235 count inserted = 2200000 elapsed = 0.066 seconds element count = 15627635 count inserted = 2300000 elapsed = 0.063 seconds element count = 16350087 count inserted = 2400000 elapsed = 0.067 seconds element count = 17075031 count inserted = 2500000 elapsed = 0.066 seconds element count = 17803481 done building octree - total elements = 18444010 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 187054 Total BCs = 739644 no-eqs = 1248366 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1248366, cols=1248366 total: nonzeros=58477488, allocated nonzeros=58477893 using I-node routines: found 416138 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1248366, cols=1248366 total: nonzeros=58477488, allocated nonzeros=58477893 using I-node routines: found 416138 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 175832 countInvalid = 3 general-count = 739641 Average of the error norm = 0.228529 Initial error = 0.515001 Average of the error norm conditional = 0.219349 Active Residual error = 0.0555306 Total error = 0.228637 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167295 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 220264 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 645 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 179084 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 573 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165851 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 4.31535 Max after displacement = 23.5401 Error points = 0 ====================== step = 8 =============== elt_vol= 7.1875 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000979 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.050489 Removing unwanted tetrahedra. Hole seconds: 0.002229 Repairing mesh. Repair seconds: 0.002239 Adding Steiner points to enforce quality. Quality seconds: 33.3535 Smoothing mesh. Smooth seconds: 1.68852 Writing nodes. Writing elements. Writing faces. Output seconds: 0.215033 Total running seconds: 35.325 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 433876 Mesh tetrahedra: 2699949 Mesh faces: 5437935 Mesh subfaces: 76074 Mesh subsegments: 835 mesh nodes = 433876 mesh elts = 2699949 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.059 seconds element count = 352326 count inserted = 200000 elapsed = 0.068 seconds element count = 986758 count inserted = 300000 elapsed = 0.104 seconds element count = 1807302 count inserted = 400000 elapsed = 0.089 seconds element count = 2600498 count inserted = 500000 elapsed = 0.087 seconds element count = 3355319 count inserted = 600000 elapsed = 0.086 seconds element count = 4085205 count inserted = 700000 elapsed = 0.056 seconds element count = 4783395 count inserted = 800000 elapsed = 0.054 seconds element count = 5478294 count inserted = 900000 elapsed = 0.054 seconds element count = 6176322 count inserted = 1000000 elapsed = 0.061 seconds element count = 6877892 count inserted = 1100000 elapsed = 0.059 seconds element count = 7573683 count inserted = 1200000 elapsed = 0.048 seconds element count = 8262982 count inserted = 1300000 elapsed = 0.063 seconds element count = 8965455 count inserted = 1400000 elapsed = 0.059 seconds element count = 9660351 count inserted = 1500000 elapsed = 0.065 seconds element count = 10362489 count inserted = 1600000 elapsed = 0.066 seconds element count = 11070874 count inserted = 1700000 elapsed = 0.067 seconds element count = 11770377 count inserted = 1800000 elapsed = 0.065 seconds element count = 12471051 count inserted = 1900000 elapsed = 0.06 seconds element count = 13170981 count inserted = 2000000 elapsed = 0.054 seconds element count = 13880960 count inserted = 2100000 elapsed = 0.042 seconds element count = 14582642 count inserted = 2200000 elapsed = 0.044 seconds element count = 15296673 count inserted = 2300000 elapsed = 0.044 seconds element count = 16002968 count inserted = 2400000 elapsed = 0.043 seconds element count = 16709748 count inserted = 2500000 elapsed = 0.053 seconds element count = 17422406 count inserted = 2600000 elapsed = 0.047 seconds element count = 18136295 done building octree - total elements = 18852806 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 188689 Total BCs = 739644 no-eqs = 1301628 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1301628, cols=1301628 total: nonzeros=60997506, allocated nonzeros=60997920 using I-node routines: found 433892 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1301628, cols=1301628 total: nonzeros=60997506, allocated nonzeros=60997920 using I-node routines: found 433892 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 188474 countInvalid = 1 general-count = 739643 Average of the error norm = 0.252404 Initial error = 0.539411 Average of the error norm conditional = 0.239951 Active Residual error = 0.0612163 Total error = 0.252405 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 149913 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147838 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 181420 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 561 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 135037 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 3.99645 Max after displacement = 22.9688 Error points = 0 ====================== step = 7 =============== elt_vol= 6.875 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001011 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.046636 Removing unwanted tetrahedra. Hole seconds: 0.002251 Repairing mesh. Repair seconds: 0.002298 Adding Steiner points to enforce quality. Quality seconds: 34.018 Smoothing mesh. Smooth seconds: 1.83977 Writing nodes. Writing elements. Writing faces. Output seconds: 0.190923 Total running seconds: 36.1111 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 453443 Mesh tetrahedra: 2822381 Mesh faces: 5684056 Mesh subfaces: 78588 Mesh subsegments: 910 mesh nodes = 453443 mesh elts = 2822381 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.061 seconds element count = 343128 count inserted = 200000 elapsed = 0.097 seconds element count = 960918 count inserted = 300000 elapsed = 0.091 seconds element count = 1755818 count inserted = 400000 elapsed = 0.08 seconds element count = 2538918 count inserted = 500000 elapsed = 0.099 seconds element count = 3278267 count inserted = 600000 elapsed = 0.079 seconds element count = 3993160 count inserted = 700000 elapsed = 0.069 seconds element count = 4676791 count inserted = 800000 elapsed = 0.057 seconds element count = 5356542 count inserted = 900000 elapsed = 0.056 seconds element count = 6039455 count inserted = 1000000 elapsed = 0.055 seconds element count = 6726330 count inserted = 1100000 elapsed = 0.074 seconds element count = 7406566 count inserted = 1200000 elapsed = 0.053 seconds element count = 8079835 count inserted = 1300000 elapsed = 0.073 seconds element count = 8766315 count inserted = 1400000 elapsed = 0.065 seconds element count = 9444917 count inserted = 1500000 elapsed = 0.066 seconds element count = 10132041 count inserted = 1600000 elapsed = 0.054 seconds element count = 10823348 count inserted = 1700000 elapsed = 0.047 seconds element count = 11508529 count inserted = 1800000 elapsed = 0.048 seconds element count = 12194955 count inserted = 1900000 elapsed = 0.054 seconds element count = 12875312 count inserted = 2000000 elapsed = 0.054 seconds element count = 13565733 count inserted = 2100000 elapsed = 0.058 seconds element count = 14256028 count inserted = 2200000 elapsed = 0.063 seconds element count = 14949882 count inserted = 2300000 elapsed = 0.059 seconds element count = 15646418 count inserted = 2400000 elapsed = 0.066 seconds element count = 16339938 count inserted = 2500000 elapsed = 0.063 seconds element count = 17032407 count inserted = 2600000 elapsed = 0.049 seconds element count = 17731464 count inserted = 2700000 elapsed = 0.048 seconds element count = 18432391 count inserted = 2800000 elapsed = 0.048 seconds element count = 19133590 done building octree - total elements = 19289828 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 191270 Total BCs = 739644 no-eqs = 1360329 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1360329, cols=1360329 total: nonzeros=63752325, allocated nonzeros=63752685 using I-node routines: found 453459 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1360329, cols=1360329 total: nonzeros=63752325, allocated nonzeros=63752685 using I-node routines: found 453459 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 204022 countInvalid = 5 general-count = 739639 Average of the error norm = 0.281921 Initial error = 0.570907 Average of the error norm conditional = 0.265789 Active Residual error = 0.0687539 Total error = 0.281963 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167302 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 240220 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 714 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172632 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 137098 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 441 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147387 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164922 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157509 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 510 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158009 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 3.67596 Max after displacement = 22.4318 Error points = 0 ====================== step = 6 =============== elt_vol= 6.5625 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.00099 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.047339 Removing unwanted tetrahedra. Hole seconds: 0.00213 Repairing mesh. Repair seconds: 0.002098 Adding Steiner points to enforce quality. Quality seconds: 37.0755 Smoothing mesh. Smooth seconds: 1.79892 Writing nodes. Writing elements. Writing faces. Output seconds: 0.235045 Total running seconds: 39.1745 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 474760 Mesh tetrahedra: 2957540 Mesh faces: 5955555 Mesh subfaces: 80950 Mesh subsegments: 930 mesh nodes = 474760 mesh elts = 2957540 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.054 seconds element count = 335588 count inserted = 200000 elapsed = 0.08 seconds element count = 933775 count inserted = 300000 elapsed = 0.112 seconds element count = 1709040 count inserted = 400000 elapsed = 0.083 seconds element count = 2472305 count inserted = 500000 elapsed = 0.072 seconds element count = 3199896 count inserted = 600000 elapsed = 0.064 seconds element count = 3901588 count inserted = 700000 elapsed = 0.061 seconds element count = 4572786 count inserted = 800000 elapsed = 0.054 seconds element count = 5236310 count inserted = 900000 elapsed = 0.054 seconds element count = 5905585 count inserted = 1000000 elapsed = 0.059 seconds element count = 6578563 count inserted = 1100000 elapsed = 0.048 seconds element count = 7243526 count inserted = 1200000 elapsed = 0.047 seconds element count = 7903679 count inserted = 1300000 elapsed = 0.048 seconds element count = 8571731 count inserted = 1400000 elapsed = 0.045 seconds element count = 9239966 count inserted = 1500000 elapsed = 0.055 seconds element count = 9908258 count inserted = 1600000 elapsed = 0.057 seconds element count = 10581428 count inserted = 1700000 elapsed = 0.049 seconds element count = 11255501 count inserted = 1800000 elapsed = 0.044 seconds element count = 11925258 count inserted = 1900000 elapsed = 0.042 seconds element count = 12593435 count inserted = 2000000 elapsed = 0.043 seconds element count = 13263414 count inserted = 2100000 elapsed = 0.044 seconds element count = 13941037 count inserted = 2200000 elapsed = 0.041 seconds element count = 14610408 count inserted = 2300000 elapsed = 0.061 seconds element count = 15291743 count inserted = 2400000 elapsed = 0.065 seconds element count = 15972963 count inserted = 2500000 elapsed = 0.064 seconds element count = 16650312 count inserted = 2600000 elapsed = 0.051 seconds element count = 17328339 count inserted = 2700000 elapsed = 0.059 seconds element count = 18008670 count inserted = 2800000 elapsed = 0.066 seconds element count = 18695076 count inserted = 2900000 elapsed = 0.048 seconds element count = 19377235 done building octree - total elements = 19772185 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 194431 Total BCs = 739644 no-eqs = 1424280 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1424280, cols=1424280 total: nonzeros=66782004, allocated nonzeros=66782364 using I-node routines: found 474776 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1424280, cols=1424280 total: nonzeros=66782004, allocated nonzeros=66782364 using I-node routines: found 474776 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 226780 countInvalid = 10 general-count = 739634 Average of the error norm = 0.321031 Initial error = 0.612645 Average of the error norm conditional = 0.300728 Active Residual error = 0.079076 Total error = 0.321066 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162422 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170881 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 561 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151110 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150381 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141755 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 187235 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164583 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 576 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 3.3534 Max after displacement = 21.9488 Error points = 0 ====================== step = 5 =============== elt_vol= 6.25 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001046 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.047291 Removing unwanted tetrahedra. Hole seconds: 0.002457 Repairing mesh. Repair seconds: 0.002571 Adding Steiner points to enforce quality. Quality seconds: 38.8369 Smoothing mesh. Smooth seconds: 1.9321 Writing nodes. Writing elements. Writing faces. Output seconds: 0.257849 Total running seconds: 41.0926 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 497947 Mesh tetrahedra: 3104509 Mesh faces: 6250785 Mesh subfaces: 83534 Mesh subsegments: 939 mesh nodes = 497947 mesh elts = 3104509 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.044 seconds element count = 330036 count inserted = 200000 elapsed = 0.089 seconds element count = 906685 count inserted = 300000 elapsed = 0.117 seconds element count = 1658923 count inserted = 400000 elapsed = 0.098 seconds element count = 2407678 count inserted = 500000 elapsed = 0.075 seconds element count = 3121353 count inserted = 600000 elapsed = 0.065 seconds element count = 3807699 count inserted = 700000 elapsed = 0.055 seconds element count = 4465885 count inserted = 800000 elapsed = 0.049 seconds element count = 5115318 count inserted = 900000 elapsed = 0.052 seconds element count = 5768853 count inserted = 1000000 elapsed = 0.055 seconds element count = 6426902 count inserted = 1100000 elapsed = 0.049 seconds element count = 7077296 count inserted = 1200000 elapsed = 0.047 seconds element count = 7722136 count inserted = 1300000 elapsed = 0.047 seconds element count = 8373841 count inserted = 1400000 elapsed = 0.044 seconds element count = 9027156 count inserted = 1500000 elapsed = 0.055 seconds element count = 9677715 count inserted = 1600000 elapsed = 0.044 seconds element count = 10337459 count inserted = 1700000 elapsed = 0.045 seconds element count = 10997985 count inserted = 1800000 elapsed = 0.042 seconds element count = 11649768 count inserted = 1900000 elapsed = 0.062 seconds element count = 12304492 count inserted = 2000000 elapsed = 0.057 seconds element count = 12954283 count inserted = 2100000 elapsed = 0.052 seconds element count = 13613401 count inserted = 2200000 elapsed = 0.04 seconds element count = 14270877 count inserted = 2300000 elapsed = 0.041 seconds element count = 14930461 count inserted = 2400000 elapsed = 0.043 seconds element count = 15595319 count inserted = 2500000 elapsed = 0.049 seconds element count = 16256591 count inserted = 2600000 elapsed = 0.055 seconds element count = 16919519 count inserted = 2700000 elapsed = 0.052 seconds element count = 17580773 count inserted = 2800000 elapsed = 0.058 seconds element count = 18246223 count inserted = 2900000 elapsed = 0.055 seconds element count = 18915919 count inserted = 3000000 elapsed = 0.041 seconds element count = 19580972 count inserted = 3100000 elapsed = 0.041 seconds element count = 20250971 done building octree - total elements = 20281079 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 197663 Total BCs = 739644 no-eqs = 1493841 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1493841, cols=1493841 total: nonzeros=70076787, allocated nonzeros=70077129 using I-node routines: found 497963 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1493841, cols=1493841 total: nonzeros=70076787, allocated nonzeros=70077129 using I-node routines: found 497963 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 256689 countInvalid = 23 general-count = 739621 Average of the error norm = 0.373511 Initial error = 0.670645 Average of the error norm conditional = 0.346129 Active Residual error = 0.092569 Total error = 0.373623 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169545 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 561 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164258 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 495 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158036 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 456 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 196690 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 573 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184540 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147355 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169502 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 558 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 178371 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163988 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 585 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165314 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 189170 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 573 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174282 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 148517 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 441 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162121 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160489 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169327 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_5 Initial transform name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 3.02632 Max after displacement = 21.291 Error points = 0 ====================== step = 4 =============== elt_vol= 5.9375 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000998 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.044801 Removing unwanted tetrahedra. Hole seconds: 0.002092 Repairing mesh. Repair seconds: 0.002069 Adding Steiner points to enforce quality. Quality seconds: 40.8285 Smoothing mesh. Smooth seconds: 1.97972 Writing nodes. Writing elements. Writing faces. Output seconds: 0.251394 Total running seconds: 43.1181 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 523514 Mesh tetrahedra: 3265121 Mesh faces: 6573492 Mesh subfaces: 86500 Mesh subsegments: 1018 mesh nodes = 523514 mesh elts = 3265121 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.056 seconds element count = 322653 count inserted = 200000 elapsed = 0.068 seconds element count = 883235 count inserted = 300000 elapsed = 0.097 seconds element count = 1611310 count inserted = 400000 elapsed = 0.091 seconds element count = 2343778 count inserted = 500000 elapsed = 0.075 seconds element count = 3042974 count inserted = 600000 elapsed = 0.068 seconds element count = 3714639 count inserted = 700000 elapsed = 0.06 seconds element count = 4359015 count inserted = 800000 elapsed = 0.053 seconds element count = 4992639 count inserted = 900000 elapsed = 0.055 seconds element count = 5630179 count inserted = 1000000 elapsed = 0.058 seconds element count = 6274447 count inserted = 1100000 elapsed = 0.051 seconds element count = 6906724 count inserted = 1200000 elapsed = 0.055 seconds element count = 7534916 count inserted = 1300000 elapsed = 0.05 seconds element count = 8172183 count inserted = 1400000 elapsed = 0.048 seconds element count = 8808339 count inserted = 1500000 elapsed = 0.045 seconds element count = 9441900 count inserted = 1600000 elapsed = 0.048 seconds element count = 10083841 count inserted = 1700000 elapsed = 0.048 seconds element count = 10731312 count inserted = 1800000 elapsed = 0.045 seconds element count = 11364747 count inserted = 1900000 elapsed = 0.048 seconds element count = 12006671 count inserted = 2000000 elapsed = 0.056 seconds element count = 12641465 count inserted = 2100000 elapsed = 0.063 seconds element count = 13283520 count inserted = 2200000 elapsed = 0.052 seconds element count = 13928674 count inserted = 2300000 elapsed = 0.054 seconds element count = 14566357 count inserted = 2400000 elapsed = 0.059 seconds element count = 15214505 count inserted = 2500000 elapsed = 0.043 seconds element count = 15863700 count inserted = 2600000 elapsed = 0.043 seconds element count = 16505754 count inserted = 2700000 elapsed = 0.047 seconds element count = 17151964 count inserted = 2800000 elapsed = 0.054 seconds element count = 17797475 count inserted = 2900000 elapsed = 0.056 seconds element count = 18445866 count inserted = 3000000 elapsed = 0.054 seconds element count = 19095537 count inserted = 3100000 elapsed = 0.058 seconds element count = 19746446 count inserted = 3200000 elapsed = 0.043 seconds element count = 20398443 done building octree - total elements = 20823399 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 201703 Total BCs = 739644 no-eqs = 1570542 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1570542, cols=1570542 total: nonzeros=73684752, allocated nonzeros=73685121 using I-node routines: found 523530 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1570542, cols=1570542 total: nonzeros=73684752, allocated nonzeros=73685121 using I-node routines: found 523530 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 294413 countInvalid = 36 general-count = 739608 Average of the error norm = 0.448644 Initial error = 0.756535 Average of the error norm conditional = 0.411435 Active Residual error = 0.112339 Total error = 0.448846 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 213574 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 690 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 204423 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 612 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174860 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 255360 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 753 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156388 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 180194 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 558 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153454 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 194500 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 579 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172538 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 178073 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151488 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 179746 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 510 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147771 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153066 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 183066 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 579 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165744 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 234867 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 687 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 224318 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 642 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157314 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150254 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147186 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146204 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141529 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156935 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 468 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 128899 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 474 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 126243 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 447 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158778 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150983 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 468 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 136989 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 456 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 199258 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 576 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_4 Initial transform name = compressed_step_5 Initial transform name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 2.68884 Max after displacement = 20.9188 Error points = 0 ====================== step = 3 =============== elt_vol= 5.625 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001012 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.04833 Removing unwanted tetrahedra. Hole seconds: 0.002027 Repairing mesh. Repair seconds: 0.002024 Adding Steiner points to enforce quality. Quality seconds: 45.4576 Smoothing mesh. Smooth seconds: 2.54288 Writing nodes. Writing elements. Writing faces. Output seconds: 0.274289 Total running seconds: 48.3402 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 552421 Mesh tetrahedra: 3448040 Mesh faces: 6941004 Mesh subfaces: 89848 Mesh subsegments: 1046 mesh nodes = 552421 mesh elts = 3448040 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.039 seconds element count = 313795 count inserted = 200000 elapsed = 0.077 seconds element count = 854973 count inserted = 300000 elapsed = 0.104 seconds element count = 1563697 count inserted = 400000 elapsed = 0.079 seconds element count = 2281566 count inserted = 500000 elapsed = 0.073 seconds element count = 2963293 count inserted = 600000 elapsed = 0.09 seconds element count = 3619467 count inserted = 700000 elapsed = 0.06 seconds element count = 4246680 count inserted = 800000 elapsed = 0.059 seconds element count = 4864197 count inserted = 900000 elapsed = 0.07 seconds element count = 5486473 count inserted = 1000000 elapsed = 0.069 seconds element count = 6116122 count inserted = 1100000 elapsed = 0.045 seconds element count = 6731628 count inserted = 1200000 elapsed = 0.065 seconds element count = 7345254 count inserted = 1300000 elapsed = 0.063 seconds element count = 7963641 count inserted = 1400000 elapsed = 0.064 seconds element count = 8584303 count inserted = 1500000 elapsed = 0.046 seconds element count = 9199438 count inserted = 1600000 elapsed = 0.045 seconds element count = 9824452 count inserted = 1700000 elapsed = 0.047 seconds element count = 10452270 count inserted = 1800000 elapsed = 0.046 seconds element count = 11074393 count inserted = 1900000 elapsed = 0.043 seconds element count = 11696648 count inserted = 2000000 elapsed = 0.046 seconds element count = 12318639 count inserted = 2100000 elapsed = 0.054 seconds element count = 12937546 count inserted = 2200000 elapsed = 0.051 seconds element count = 13565188 count inserted = 2300000 elapsed = 0.052 seconds element count = 14191774 count inserted = 2400000 elapsed = 0.04 seconds element count = 14816348 count inserted = 2500000 elapsed = 0.041 seconds element count = 15449210 count inserted = 2600000 elapsed = 0.042 seconds element count = 16082192 count inserted = 2700000 elapsed = 0.042 seconds element count = 16711070 count inserted = 2800000 elapsed = 0.046 seconds element count = 17338766 count inserted = 2900000 elapsed = 0.042 seconds element count = 17967236 count inserted = 3000000 elapsed = 0.042 seconds element count = 18600857 count inserted = 3100000 elapsed = 0.04 seconds element count = 19233975 count inserted = 3200000 elapsed = 0.041 seconds element count = 19868681 count inserted = 3300000 elapsed = 0.046 seconds element count = 20501765 count inserted = 3400000 elapsed = 0.046 seconds element count = 21140684 done building octree - total elements = 21445890 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 206368 Total BCs = 739644 no-eqs = 1657263 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1657263, cols=1657263 total: nonzeros=77788023, allocated nonzeros=77788338 using I-node routines: found 552437 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1657263, cols=1657263 total: nonzeros=77788023, allocated nonzeros=77788338 using I-node routines: found 552437 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 353702 countInvalid = 104 general-count = 739540 Average of the error norm = 0.570162 Initial error = 0.896146 Average of the error norm conditional = 0.516456 Active Residual error = 0.144326 Total error = 0.570731 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 135115 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 313226 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 915 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154350 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184576 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 564 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 337314 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 999 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 290899 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 777 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 173695 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 232024 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 711 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168849 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 555 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 179738 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 126703 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 438 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 144755 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 186833 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 222845 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 687 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172276 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 133972 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 282564 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 861 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 196948 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 633 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158479 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 558 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 161396 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174113 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157911 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 132878 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 474 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164993 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 136628 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 291742 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 843 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169206 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 489 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 183808 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169882 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 495 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175654 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152135 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 447 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141522 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 468 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 145008 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 252828 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 756 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184413 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168221 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 128619 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 468 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151093 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 495 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163285 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 180578 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 126938 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 474 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 284730 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 816 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176816 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 576 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 227344 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 681 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164505 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 579 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174940 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 225040 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 780 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167482 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 139380 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 447 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 137398 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 489 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 121992 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 441 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153450 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155241 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158811 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 489 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158864 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_3 Initial transform name = compressed_step_4 Initial transform name = compressed_step_5 Initial transform name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 2.33564 Max after displacement = 20.9804 Error points = 0 ====================== step = 2 =============== elt_vol= 5.3125 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.000878 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.047116 Removing unwanted tetrahedra. Hole seconds: 0.002123 Repairing mesh. Repair seconds: 0.002145 Adding Steiner points to enforce quality. Quality seconds: 43.8709 Smoothing mesh. Smooth seconds: 2.20692 Writing nodes. Writing elements. Writing faces. Output seconds: 0.256934 Total running seconds: 46.4002 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 584532 Mesh tetrahedra: 3650501 Mesh faces: 7347669 Mesh subfaces: 93334 Mesh subsegments: 1080 mesh nodes = 584532 mesh elts = 3650501 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.039 seconds element count = 306923 count inserted = 200000 elapsed = 0.06 seconds element count = 829092 count inserted = 300000 elapsed = 0.084 seconds element count = 1517431 count inserted = 400000 elapsed = 0.079 seconds element count = 2213668 count inserted = 500000 elapsed = 0.073 seconds element count = 2881337 count inserted = 600000 elapsed = 0.064 seconds element count = 3521545 count inserted = 700000 elapsed = 0.056 seconds element count = 4131965 count inserted = 800000 elapsed = 0.055 seconds element count = 4736241 count inserted = 900000 elapsed = 0.073 seconds element count = 5341346 count inserted = 1000000 elapsed = 0.056 seconds element count = 5953645 count inserted = 1100000 elapsed = 0.048 seconds element count = 6551973 count inserted = 1200000 elapsed = 0.055 seconds element count = 7151841 count inserted = 1300000 elapsed = 0.06 seconds element count = 7754352 count inserted = 1400000 elapsed = 0.053 seconds element count = 8360037 count inserted = 1500000 elapsed = 0.06 seconds element count = 8956738 count inserted = 1600000 elapsed = 0.062 seconds element count = 9563757 count inserted = 1700000 elapsed = 0.047 seconds element count = 10172386 count inserted = 1800000 elapsed = 0.048 seconds element count = 10781300 count inserted = 1900000 elapsed = 0.04 seconds element count = 11383265 count inserted = 2000000 elapsed = 0.047 seconds element count = 11989378 count inserted = 2100000 elapsed = 0.043 seconds element count = 12591586 count inserted = 2200000 elapsed = 0.045 seconds element count = 13199764 count inserted = 2300000 elapsed = 0.058 seconds element count = 13810960 count inserted = 2400000 elapsed = 0.046 seconds element count = 14415632 count inserted = 2500000 elapsed = 0.042 seconds element count = 15028308 count inserted = 2600000 elapsed = 0.044 seconds element count = 15643557 count inserted = 2700000 elapsed = 0.043 seconds element count = 16262079 count inserted = 2800000 elapsed = 0.042 seconds element count = 16872545 count inserted = 2900000 elapsed = 0.042 seconds element count = 17482739 count inserted = 3000000 elapsed = 0.041 seconds element count = 18094009 count inserted = 3100000 elapsed = 0.043 seconds element count = 18711750 count inserted = 3200000 elapsed = 0.038 seconds element count = 19326800 count inserted = 3300000 elapsed = 0.041 seconds element count = 19947592 count inserted = 3400000 elapsed = 0.042 seconds element count = 20562800 count inserted = 3500000 elapsed = 0.038 seconds element count = 21179581 count inserted = 3600000 elapsed = 0.039 seconds element count = 21801418 done building octree - total elements = 22114301 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 212730 Total BCs = 739644 no-eqs = 1753596 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1753596, cols=1753596 total: nonzeros=82330728, allocated nonzeros=82331025 using I-node routines: found 584548 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1753596, cols=1753596 total: nonzeros=82330728, allocated nonzeros=82331025 using I-node routines: found 584548 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 467348 countInvalid = 305 general-count = 739339 Average of the error norm = 0.803508 Initial error = 1.16716 Average of the error norm conditional = 0.717594 Active Residual error = 0.207401 Total error = 0.806029 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 410593 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1170 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 161643 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 539725 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1605 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 171035 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174753 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 555 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 227529 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 669 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154542 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 510 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 319384 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 876 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 334287 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1125 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 229231 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 705 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151040 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 492 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153996 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176090 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 333045 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1044 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 182771 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162023 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 284325 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 858 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177017 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 130364 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 441 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 149679 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 149019 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 456 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 249765 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 732 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 676173 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2757 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 231300 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 720 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 490207 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1638 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 302699 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 810 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 133999 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 462 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156009 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 441 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 280893 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 858 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 449869 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1284 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 191321 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 627 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 215175 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 702 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154396 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 305926 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 969 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152280 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 453 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 240597 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 705 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166066 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146116 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 143176 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 219820 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 651 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 200744 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 570 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166089 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141583 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 489 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 411401 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1413 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 209308 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 678 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 148059 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 468 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175531 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 603 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154694 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 231622 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 681 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 233786 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 627 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 258396 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 717 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162660 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 180463 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 235935 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 699 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165105 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163960 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158786 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174951 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 264443 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 789 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 196402 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 179377 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 188575 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164020 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 191351 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 309629 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 927 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174582 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160312 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 266615 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 759 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 389200 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1194 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 219985 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 699 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172930 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 492 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 238851 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 729 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 216687 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 624 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160282 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 462 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155470 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 182867 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 582 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176904 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 558 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 210475 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 648 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 223790 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 684 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 187688 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 555 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174698 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 591 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177186 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 588 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184315 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162152 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154359 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157794 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166142 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162157 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151231 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155543 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162867 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174235 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 555 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 356465 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1077 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 220928 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 603 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158572 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153993 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156625 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169339 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 161452 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 161386 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153047 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 441 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 249693 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 681 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158628 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170634 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 138228 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 447 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174858 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150612 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156579 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_2 Initial transform name = compressed_step_3 Initial transform name = compressed_step_4 Initial transform name = compressed_step_5 Initial transform name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 1.95267 Max after displacement = 21.5198 Error points = 0 ====================== step = 1 =============== elt_vol= 5 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.001063 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.047784 Removing unwanted tetrahedra. Hole seconds: 0.002056 Repairing mesh. Repair seconds: 0.002263 Adding Steiner points to enforce quality. Quality seconds: 47.9955 Smoothing mesh. Smooth seconds: 2.2981 Writing nodes. Writing elements. Writing faces. Output seconds: 0.293951 Total running seconds: 50.6522 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 620359 Mesh tetrahedra: 3877747 Mesh faces: 7803988 Mesh subfaces: 96988 Mesh subsegments: 1102 mesh nodes = 620359 mesh elts = 3877747 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.038 seconds element count = 299591 count inserted = 200000 elapsed = 0.062 seconds element count = 802132 count inserted = 300000 elapsed = 0.077 seconds element count = 1462928 count inserted = 400000 elapsed = 0.077 seconds element count = 2140086 count inserted = 500000 elapsed = 0.073 seconds element count = 2794174 count inserted = 600000 elapsed = 0.072 seconds element count = 3420638 count inserted = 700000 elapsed = 0.058 seconds element count = 4016638 count inserted = 800000 elapsed = 0.054 seconds element count = 4606108 count inserted = 900000 elapsed = 0.054 seconds element count = 5194060 count inserted = 1000000 elapsed = 0.056 seconds element count = 5790229 count inserted = 1100000 elapsed = 0.046 seconds element count = 6372939 count inserted = 1200000 elapsed = 0.05 seconds element count = 6958870 count inserted = 1300000 elapsed = 0.049 seconds element count = 7542424 count inserted = 1400000 elapsed = 0.049 seconds element count = 8131764 count inserted = 1500000 elapsed = 0.044 seconds element count = 8710651 count inserted = 1600000 elapsed = 0.047 seconds element count = 9299581 count inserted = 1700000 elapsed = 0.045 seconds element count = 9891240 count inserted = 1800000 elapsed = 0.047 seconds element count = 10484455 count inserted = 1900000 elapsed = 0.054 seconds element count = 11068230 count inserted = 2000000 elapsed = 0.053 seconds element count = 11662544 count inserted = 2100000 elapsed = 0.056 seconds element count = 12249172 count inserted = 2200000 elapsed = 0.046 seconds element count = 12834621 count inserted = 2300000 elapsed = 0.043 seconds element count = 13430065 count inserted = 2400000 elapsed = 0.041 seconds element count = 14020891 count inserted = 2500000 elapsed = 0.04 seconds element count = 14610797 count inserted = 2600000 elapsed = 0.044 seconds element count = 15208325 count inserted = 2700000 elapsed = 0.054 seconds element count = 15806549 count inserted = 2800000 elapsed = 0.06 seconds element count = 16405468 count inserted = 2900000 elapsed = 0.047 seconds element count = 16996719 count inserted = 3000000 elapsed = 0.042 seconds element count = 17590931 count inserted = 3100000 elapsed = 0.039 seconds element count = 18183124 count inserted = 3200000 elapsed = 0.05 seconds element count = 18782539 count inserted = 3300000 elapsed = 0.04 seconds element count = 19380276 count inserted = 3400000 elapsed = 0.042 seconds element count = 19981205 count inserted = 3500000 elapsed = 0.044 seconds element count = 20583995 count inserted = 3600000 elapsed = 0.039 seconds element count = 21184866 count inserted = 3700000 elapsed = 0.042 seconds element count = 21783645 count inserted = 3800000 elapsed = 0.046 seconds element count = 22389442 done building octree - total elements = 22858082 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 220479 Total BCs = 739644 no-eqs = 1861077 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1861077, cols=1861077 total: nonzeros=87421353, allocated nonzeros=87421659 using I-node routines: found 620375 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1861077, cols=1861077 total: nonzeros=87421353, allocated nonzeros=87421659 using I-node routines: found 620375 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 764419 countInvalid = 3709 general-count = 735935 Average of the error norm = 1.46486 Initial error = 1.9388 Average of the error norm conditional = 1.28344 Active Residual error = 0.391575 Total error = 1.50416 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 438774 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1236 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1173181 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 8388 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 557930 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1803 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158418 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1355005 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 7299 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1175632 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 7251 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 899080 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 3609 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1116026 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 5247 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1028765 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 7641 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1090066 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 7731 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 702143 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2070 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 265386 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 852 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 792731 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2685 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1399531 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 5865 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 285066 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 804 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 148388 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151712 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 492 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 240612 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 720 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152795 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 446963 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1224 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 743656 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2361 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 296893 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 861 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 185977 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 604393 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1533 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 480846 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1557 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 188406 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 609 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176430 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175609 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170496 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 600 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 432421 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1374 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 382854 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1074 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 215711 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 654 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 525296 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1521 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 406485 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1182 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 282830 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 807 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 309558 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 837 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170588 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 286016 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 849 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 171108 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 373106 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1074 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168231 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 143999 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 435 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175866 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 594 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165291 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164869 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 631021 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1905 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 143407 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 196156 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174182 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 561 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155867 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 195846 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 591 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 135495 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 348618 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 978 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146987 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 181998 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 249284 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 699 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 369847 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 972 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 133725 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 481092 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1296 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155251 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 495 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 216401 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 744 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 242758 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 696 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160222 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 161707 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166386 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 250336 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 714 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 266163 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 789 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 190783 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 338625 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1002 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 268708 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 774 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166899 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 576 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 366138 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1026 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 558624 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1641 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 136884 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 116761 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151755 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 284908 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 768 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160527 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 374585 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 957 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 432338 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1314 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 252647 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 672 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 112225 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 254305 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 711 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 181474 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 573 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 145877 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 474 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147369 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 264033 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 747 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175207 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155166 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156492 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166544 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 135658 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 477 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 239761 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 705 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 134613 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 456 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 140851 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 270672 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 801 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 226962 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 705 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 309900 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1029 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 336918 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1005 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164439 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165423 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168381 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157805 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 244383 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 738 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 194954 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 558 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174479 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 510 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 255704 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 675 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 210294 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 627 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163318 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165463 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 404819 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1239 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 196475 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 579 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 322156 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 933 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167909 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 220995 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 615 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 325375 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 921 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 178266 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 180162 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 570 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168964 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 195570 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 669 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141969 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 134826 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 420 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 145911 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 159308 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150659 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 131838 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 161367 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 179420 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 245034 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 822 DirectSolverConvergence = ksp-converged-rtol Still having pbs after untangling btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 277970 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 852 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 239219 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 756 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 191260 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 110110 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 399 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 272790 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 762 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 191398 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 576 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153647 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 477 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 143044 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 447 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165405 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 238772 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 699 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166173 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163162 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 495 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177152 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 567 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157020 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 225229 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 738 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 234016 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 696 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160148 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170761 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177306 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154402 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160393 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174973 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 148602 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 247896 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 756 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 173767 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167425 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 123751 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 453 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184240 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157979 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 262101 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 753 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174877 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 243817 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 738 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150487 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 226872 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 636 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172930 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 189129 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150072 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 205393 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 615 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 240329 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 696 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 169995 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 543 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 247176 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 717 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 182500 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 195828 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 579 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163343 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 453 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167209 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 212940 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 675 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 143192 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 450 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165774 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 183431 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after orientation pbs persisting initially 1801 post = 9 new problems size = 9 DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_1 Initial transform name = compressed_step_2 Initial transform name = compressed_step_3 Initial transform name = compressed_step_4 Initial transform name = compressed_step_5 Initial transform name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 1.51848 Max after displacement = 22.2794 Error points = 0 ====================== step = 0 =============== elt_vol= 5 Constructing Delaunay tetrahedralization. Delaunay seconds: 0.00193 Creating surface mesh. Perturbing vertices. Delaunizing segments. Constraining facets. Segment and facet seconds: 0.052484 Removing unwanted tetrahedra. Hole seconds: 0.002408 Repairing mesh. Repair seconds: 0.002349 Adding Steiner points to enforce quality. Quality seconds: 46.8279 Smoothing mesh. Smooth seconds: 2.62291 Writing nodes. Writing elements. Writing faces. Output seconds: 0.326829 Total running seconds: 49.8478 Statistics: Input points: 8 Input facets: 6 Input holes: 0 Input regions: 0 Mesh points: 620359 Mesh tetrahedra: 3877747 Mesh faces: 7803988 Mesh subfaces: 96988 Mesh subsegments: 1102 mesh nodes = 620359 mesh elts = 3877747 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 count inserted = 100000 elapsed = 0.08 seconds element count = 299591 count inserted = 200000 elapsed = 0.12 seconds element count = 802132 count inserted = 300000 elapsed = 0.117 seconds element count = 1462928 count inserted = 400000 elapsed = 0.121 seconds element count = 2140086 count inserted = 500000 elapsed = 0.113 seconds element count = 2794174 count inserted = 600000 elapsed = 0.084 seconds element count = 3420638 count inserted = 700000 elapsed = 0.069 seconds element count = 4016638 count inserted = 800000 elapsed = 0.072 seconds element count = 4606108 count inserted = 900000 elapsed = 0.078 seconds element count = 5194060 count inserted = 1000000 elapsed = 0.082 seconds element count = 5790229 count inserted = 1100000 elapsed = 0.077 seconds element count = 6372939 count inserted = 1200000 elapsed = 0.065 seconds element count = 6958870 count inserted = 1300000 elapsed = 0.058 seconds element count = 7542424 count inserted = 1400000 elapsed = 0.073 seconds element count = 8131764 count inserted = 1500000 elapsed = 0.064 seconds element count = 8710651 count inserted = 1600000 elapsed = 0.069 seconds element count = 9299581 count inserted = 1700000 elapsed = 0.07 seconds element count = 9891240 count inserted = 1800000 elapsed = 0.069 seconds element count = 10484455 count inserted = 1900000 elapsed = 0.063 seconds element count = 11068230 count inserted = 2000000 elapsed = 0.061 seconds element count = 11662544 count inserted = 2100000 elapsed = 0.047 seconds element count = 12249172 count inserted = 2200000 elapsed = 0.047 seconds element count = 12834621 count inserted = 2300000 elapsed = 0.052 seconds element count = 13430065 count inserted = 2400000 elapsed = 0.061 seconds element count = 14020891 count inserted = 2500000 elapsed = 0.045 seconds element count = 14610797 count inserted = 2600000 elapsed = 0.046 seconds element count = 15208325 count inserted = 2700000 elapsed = 0.046 seconds element count = 15806549 count inserted = 2800000 elapsed = 0.048 seconds element count = 16405468 count inserted = 2900000 elapsed = 0.047 seconds element count = 16996719 count inserted = 3000000 elapsed = 0.044 seconds element count = 17590931 count inserted = 3100000 elapsed = 0.042 seconds element count = 18183124 count inserted = 3200000 elapsed = 0.05 seconds element count = 18782539 count inserted = 3300000 elapsed = 0.047 seconds element count = 19380276 count inserted = 3400000 elapsed = 0.05 seconds element count = 19981205 count inserted = 3500000 elapsed = 0.056 seconds element count = 20583995 count inserted = 3600000 elapsed = 0.058 seconds element count = 21184866 count inserted = 3700000 elapsed = 0.055 seconds element count = 21783645 count inserted = 3800000 elapsed = 0.042 seconds element count = 22389442 done building octree - total elements = 22858082 penalty_weight = 1000 setting bc 256 256 256 -> 0 0 0 instead 255.99 255.99 255.99 -> norm = 0.0173205 setting bc 256 256 20.182 -> 0 0 0 instead 255.99 255.99 20.192 -> norm = 0.0173205 setting bc 256 43.4081 256 -> 0 0 0 instead 255.99 43.4181 255.99 -> norm = 0.0173205 setting bc 256 43.4081 20.182 -> 0 0 0 instead 255.99 43.4181 20.192 -> norm = 0.0173205 setting bc 32.8522 256 256 -> 0 0 0 instead 32.8622 255.99 255.99 -> norm = 0.0173205 setting bc 32.8522 256 20.182 -> 0 0 0 instead 32.8622 255.99 20.192 -> norm = 0.0173205 setting bc 32.8522 43.4081 256 -> 0 0 0 instead 32.8622 43.4181 255.99 -> norm = 0.0173205 setting bc 32.8522 43.4081 20.182 -> 0 0 0 instead 32.8622 43.4181 20.192 -> norm = 0.0173205 computing statistics for the displacement application error average norm of error in placement = 0.0173205 iterating done with candidates Active BCs = 222198 Total BCs = 739644 no-eqs = 1861077 percentage done= 0 percentage done= 5 percentage done= 10 percentage done= 15 percentage done= 20 percentage done= 25 percentage done= 30 percentage done= 35 percentage done= 40 percentage done= 45 percentage done= 50 percentage done= 55 percentage done= 60 percentage done= 65 percentage done= 70 percentage done= 75 percentage done= 80 percentage done= 85 percentage done= 90 percentage done= 95 done_bc_natural size of container = 739644 after building the map LOAD size = 24 after setup_load_mfc Linear solve converged due to CONVERGED_ITS iterations 1 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1861077, cols=1861077 total: nonzeros=87421353, allocated nonzeros=87421659 using I-node routines: found 620375 nodes, limit used is 5 convergence reason = 4 KSP Object: type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-09, absolute=1e-50, divergence=10000 left preconditioning PC Object: type: jacobi linear system matrix = precond matrix: Matrix Object: type=seqaij, rows=1861077, cols=1861077 total: nonzeros=87421353, allocated nonzeros=87421659 using I-node routines: found 620375 nodes, limit used is 5 Iterations 1 Absolute-Norm of error = 527413 countInvalid = 1632 general-count = 738012 Average of the error norm = 1.30322 Initial error = 1.5117 Average of the error norm conditional = 1.09354 Active Residual error = 0.333271 Total error = 1.32068 c0324 time elapsed updating the sources (seconds) = 0 orientation_pbs solving topology problems using old topology solver using Lame constants given by E = 1000 nu = 0.3 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 525106 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1623 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158418 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 552648 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1599 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 727432 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2697 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 457491 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1332 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160438 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 331402 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 909 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1129444 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 5664 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 148388 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 225844 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 690 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 204122 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 588 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 574178 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1998 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156170 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 118266 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 426 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174381 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 414345 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1119 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 1167975 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 4941 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 320223 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 897 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 218094 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 651 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151835 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 140065 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 462 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176430 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 728913 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2322 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 226377 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 708 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170496 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 600 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 178724 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160583 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 195372 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 570 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 189558 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 624 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 245084 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 720 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 432018 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1329 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170588 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 561767 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1800 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 303632 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1011 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170871 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168231 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 226645 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 753 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175866 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 594 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 225116 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 687 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 375213 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1002 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164869 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 549815 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1608 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152747 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 332839 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 990 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 191124 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 603 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176774 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 357676 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1011 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 319203 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 927 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 280445 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 846 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 227510 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 702 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 261749 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 759 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 216567 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 636 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 324746 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 888 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 384188 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1206 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 360498 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1038 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141026 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 135495 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 242785 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 729 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 363641 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1002 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168033 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154223 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 252351 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 744 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154413 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 210554 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 636 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166618 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 133725 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 202334 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 651 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146750 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 264297 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 732 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 710057 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 2805 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166386 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 171843 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 254963 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 759 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166899 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 576 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 116761 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 465 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 144180 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 462 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 452731 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1323 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 185689 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 606 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 153793 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 450 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 156498 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 235827 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 663 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 251589 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 759 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 282240 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 879 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154028 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 252647 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 672 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 373286 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1080 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164772 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 564 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155166 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 135658 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 477 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155415 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146489 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 398268 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1254 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 273095 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 768 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 186567 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 273633 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 750 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 144126 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 522 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 147673 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 144422 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 477 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 136097 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 492 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 181458 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 585 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 157972 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 502798 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1455 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 131736 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 417 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 295282 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 909 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177775 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163318 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 171673 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150276 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 211796 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 552 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 392238 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1086 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 186803 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 564 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 401354 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 1182 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 182466 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166744 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 138779 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 160975 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 549 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172939 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 141969 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 154035 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 477 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 217892 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 591 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 139945 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 145911 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 270500 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 744 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168896 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 546 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152580 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 459 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 221597 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 675 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 275218 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 837 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176767 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 594 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167728 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 260883 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 756 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175855 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 585 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 183384 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 636 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 202240 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 585 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155800 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 477 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 185067 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 489 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 155146 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146024 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175823 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 495 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165043 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 190547 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 594 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 216213 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 669 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 163728 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158903 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 531 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177306 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 168102 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 175179 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 145232 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 486 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184742 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 507 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 235876 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 627 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 149278 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 307506 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 939 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 177155 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 134474 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 435 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 184240 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 186336 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 537 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 236249 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 723 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 150487 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 471 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 182569 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 170127 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 510 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166419 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 498 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 174630 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 172930 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 171856 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 525 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 162936 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 513 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165049 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 176132 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 516 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 145772 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 215152 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 678 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 173566 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 151773 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 152692 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 187678 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 159378 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 534 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 138511 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165318 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 501 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 167180 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 483 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 158249 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 504 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 181716 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 540 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 132224 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 399 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 166228 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 519 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 164192 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 570 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 146403 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 435 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 183014 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 510 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 165774 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 480 DirectSolverConvergence = ksp-converged-rtol btest = 1 building index src done building the list count inserted = 0 elapsed = 0 seconds element count = 1 done building octree - total elements = 159383 solving cropped problem computing statistics for the displacement application error average norm of error in placement = 0 LOAD size = 528 DirectSolverConvergence = ksp-converged-rtol btest = 1 before after !!!! No residual problems. DONE compressing morph dcds mesh direct image = 6.95254e-310 0 2.3342e-312 dir img for computed transform = 6.95254e-310 6.95254e-310 2.42029e-315 dir img for compressed = 6.95254e-310 6.95254e-310 2.42029e-315 dcds total image for source point = 6.95254e-310 6.95254e-310 2.42029e-315 name = compressed_step_0 Initial transform name = compressed_step_1 Initial transform name = compressed_step_2 Initial transform name = compressed_step_3 Initial transform name = compressed_step_4 Initial transform name = compressed_step_5 Initial transform name = compressed_step_6 Initial transform name = compressed_step_7 Initial transform name = compressed_step_8 Initial transform name = compressed_step_9 Initial transform name = compressed_step_10 Initial transform name = compressed_step_11 Initial transform name = compressed_step_12 Initial transform name = compressed_step_13 Initial transform name = compressed_step_14 Initial transform name = compressed_step_15 Initial transform name = compressed_step_16 Initial transform name = compressed_step_17 Initial transform name = FEM error Initial displacement = 7.31806 Final displacement = 1.32923 Max after displacement = 23.3635 Error points = 0 axe z = 0 z = 10 z = 20 z = 30 z = 40 z = 50 z = 60 z = 70 z = 80 z = 90 z = 100 z = 110 z = 120 z = 130 z = 140 z = 150 z = 160 z = 170 z = 180 z = 190 z = 200 z = 210 z = 220 z = 230 z = 240 z = 250 Invalid voxels = 5667356 Valid = 10779753 baly FEM error Initial displacement = 7.31806 Final displacement = 1.32923 Max after displacement = 23.3635 Error points = 0 will write volume morph in file CVS/el_reg_toSynthF.tm3d saveTransform code writing transform size = 16 saveTransform code writing transform size = 22263661 saveTransform code writing transform size = 21956561 saveTransform code writing transform size = 21623905 saveTransform code writing transform size = 21352974 saveTransform code writing transform size = 21100000 saveTransform code writing transform size = 20819833 saveTransform code writing transform size = 20578742 saveTransform code writing transform size = 20343578 saveTransform code writing transform size = 20090826 saveTransform code writing transform size = 19864537 saveTransform code writing transform size = 19617743 saveTransform code writing transform size = 19412803 saveTransform code writing transform size = 19216384 saveTransform code writing transform size = 19079471 saveTransform code writing transform size = 18934740 saveTransform code writing transform size = 19185422 saveTransform code writing transform size = 20406681 saveTransform code writing transform size = 19670144 saveTransform code writing transform size = 71 writing morph to file CVS/el_reg_toSynthF.tm3d z = 0 z = 10 z = 20 z = 30 z = 40 z = 50 z = 60 z = 70 z = 80 z = 90 z = 100 z = 110 z = 120 z = 130 z = 140 z = 150 z = 160 z = 170 z = 180 z = 190 z = 200 z = 210 z = 220 z = 230 z = 240 z = 250 Invalid voxels = 0 Valid = 15940278 releasing Petsc resources process performed in 34.1163 minutes mri_cvs_register: Step 2 (elastic registration) took 2048 seconds applyMorph --template /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz --transform CVS/el_reg_toSynthF.tm3d vol /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz CVS/el_reg_toSynthF_aseg.mgz nearest Template name:/usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz After loading template Template name:/usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz After loading template extension = tm3d data size = 16 uilen = 3 loading transform id string = data size = 22263661 uilen = 24 loading transform id string = compressed_step_17 data size = 21956561 uilen = 24 loading transform id string = compressed_step_16 data size = 21623905 uilen = 24 loading transform id string = compressed_step_15 data size = 21352974 uilen = 24 loading transform id string = compressed_step_14 data size = 21100000 uilen = 24 loading transform id string = compressed_step_13 data size = 20819833 uilen = 24 loading transform id string = compressed_step_12 data size = 20578742 uilen = 24 loading transform id string = compressed_step_11 data size = 20343578 uilen = 24 loading transform id string = compressed_step_10 data size = 20090826 uilen = 23 loading transform id string = compressed_step_9 data size = 19864537 uilen = 23 loading transform id string = compressed_step_8 data size = 19617743 uilen = 23 loading transform id string = compressed_step_7 data size = 19412803 uilen = 23 loading transform id string = compressed_step_6 data size = 19216384 uilen = 23 loading transform id string = compressed_step_5 data size = 19079471 uilen = 23 loading transform id string = compressed_step_4 data size = 18934740 uilen = 23 loading transform id string = compressed_step_3 data size = 19185422 uilen = 23 loading transform id string = compressed_step_2 data size = 20406681 uilen = 23 loading transform id string = compressed_step_1 data size = 19670144 uilen = 23 loading transform id string = compressed_step_0 data size = 71 uilen = 7 loading transform id string = loaded transform executing filter on file /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz z = 0 z = 10 z = 20 z = 30 z = 40 z = 50 z = 60 z = 70 z = 80 z = 90 z = 100 z = 110 z = 120 z = 130 z = 140 z = 150 z = 160 z = 170 z = 180 z = 190 z = 200 z = 210 z = 220 z = 230 z = 240 z = 250 Invalid voxels = 5667356 Valid = 10779753 done morphing - will write next done morph applied in 2.20938 minutes mri_nl_align -noneg -1 -passes 3 -z -1 -aseg -dtrans .1 -apply 1 -sigma .25 -intensity 0.0 -fixed -dt 0.25 -m 0.25 -T /usr/local/freesurfer/bin/id.xfm CVS/el_reg_toSynthF_aseg.mgz /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz CVS/nlalign-aseg.m3z ======= NUMBER OF OPENMP THREADS = 8 ======= allowing folds during numerical minimization and removing them before termination integrating in 3 passes (default=3) disabling zero image locations for initial run, then enabling treating inputs as segmentations setting distance transform coefficient to 0.100 applying transform after registration using sigma=0.250 setting l_log_likelihood = 0.000 using fixed time-step integration using dt = 0.250 momentum = 0.25 reading transform from /usr/local/freesurfer/bin/id.xfm... converting ras xform to voxel xform initializing GCAM with vox->vox matrix: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; det(m_affine) = 1.00 (predicted orig area = 1.0) 2751 WMSA labels replaced with WM disabling zero nodes creating distance transform for Left_Thalamus_Proper, frame 0... creating distance transform for Right_Thalamus_Proper, frame 1... creating distance transform for Left_Putamen, frame 2... creating distance transform for Right_Putamen, frame 3... creating distance transform for Left_Pallidum, frame 4... creating distance transform for Right_Pallidum, frame 5... creating distance transform for Left_Lateral_Ventricle, frame 6... creating distance transform for Right_Lateral_Ventricle, frame 7... creating distance transform for Left_Caudate, frame 8... creating distance transform for Right_Caudate, frame 9... creating distance transform for Left_Cerebral_White_Matter, frame 10... creating distance transform for Right_Cerebral_White_Matter, frame 11... creating distance transform for Left_Hippocampus, frame 12... creating distance transform for Right_Hippocampus, frame 13... creating distance transform for Left_Amygdala, frame 14... creating distance transform for Right_Amygdala, frame 15... creating distance transform for Left_VentralDC, frame 16... creating distance transform for Right_VentralDC, frame 17... creating distance transform for Brain_Stem, frame 18... creating distance transform for Left_Inf_Lat_Vent, frame 19... creating distance transform for Right_Inf_Lat_Vent, frame 20... creating distance transform for Left_Cerebral_Cortex, frame 21... creating distance transform for Right_Cerebral_Cortex, frame 22... creating distance transform for Left_Cerebellum_White_Matter, frame 23... creating distance transform for Right_Cerebellum_White_Matter, frame 24... creating distance transform for Left_Cerebellum_Cortex, frame 25... creating distance transform for Right_Cerebellum_Cortex, frame 26... creating distance transform for Unknown, frame 27... **************** pass 1 of 3 ************************ setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.560, neg=0, invalid=1530 0001: dt=4.250000, rms=0.556 (0.627%), neg=0, invalid=1530 0002: dt=4.250000, rms=0.552 (0.736%), neg=0, invalid=1530 0003: dt=4.250000, rms=0.548 (0.716%), neg=0, invalid=1530 0004: dt=4.250000, rms=0.545 (0.669%), neg=0, invalid=1530 0005: dt=4.250000, rms=0.541 (0.620%), neg=0, invalid=1530 0006: dt=4.250000, rms=0.538 (0.573%), neg=0, invalid=1530 0007: dt=4.250000, rms=0.535 (0.530%), neg=0, invalid=1530 0008: dt=4.250000, rms=0.533 (0.501%), neg=0, invalid=1530 0009: dt=4.250000, rms=0.530 (0.478%), neg=0, invalid=1530 0010: dt=4.250000, rms=0.528 (0.454%), neg=0, invalid=1530 0011: dt=4.250000, rms=0.525 (0.431%), neg=0, invalid=1530 0012: dt=4.250000, rms=0.523 (0.413%), neg=0, invalid=1530 0013: dt=4.250000, rms=0.521 (0.397%), neg=0, invalid=1530 0014: dt=4.250000, rms=0.519 (0.377%), neg=0, invalid=1530 0015: dt=4.250000, rms=0.517 (0.360%), neg=0, invalid=1530 0016: dt=4.250000, rms=0.516 (0.346%), neg=0, invalid=1530 0017: dt=4.250000, rms=0.514 (0.333%), neg=0, invalid=1530 0018: dt=4.250000, rms=0.512 (0.318%), neg=0, invalid=1530 0019: dt=4.250000, rms=0.511 (0.305%), neg=0, invalid=1530 0020: dt=4.250000, rms=0.509 (0.292%), neg=0, invalid=1530 0021: dt=4.250000, rms=0.508 (0.280%), neg=0, invalid=1530 0022: dt=4.250000, rms=0.506 (0.270%), neg=0, invalid=1530 0023: dt=4.250000, rms=0.505 (0.262%), neg=0, invalid=1530 0024: dt=4.250000, rms=0.504 (0.254%), neg=0, invalid=1530 0025: dt=4.250000, rms=0.503 (0.245%), neg=0, invalid=1530 0026: dt=4.250000, rms=0.501 (0.237%), neg=0, invalid=1530 0027: dt=4.250000, rms=0.500 (0.229%), neg=0, invalid=1530 0028: dt=4.250000, rms=0.499 (0.221%), neg=0, invalid=1530 0029: dt=4.250000, rms=0.498 (0.213%), neg=0, invalid=1530 0030: dt=4.250000, rms=0.497 (0.205%), neg=0, invalid=1530 0031: dt=4.250000, rms=0.496 (0.198%), neg=0, invalid=1530 0032: dt=4.250000, rms=0.495 (0.191%), neg=0, invalid=1530 0033: dt=4.250000, rms=0.494 (0.185%), neg=0, invalid=1530 0034: dt=4.250000, rms=0.493 (0.179%), neg=0, invalid=1530 0035: dt=4.250000, rms=0.492 (0.174%), neg=0, invalid=1530 0036: dt=4.250000, rms=0.492 (0.169%), neg=0, invalid=1530 0037: dt=4.250000, rms=0.491 (0.164%), neg=0, invalid=1530 0038: dt=4.250000, rms=0.490 (0.159%), neg=0, invalid=1530 0039: dt=4.250000, rms=0.489 (0.154%), neg=0, invalid=1530 0040: dt=4.250000, rms=0.489 (0.150%), neg=0, invalid=1530 0041: dt=4.250000, rms=0.488 (0.145%), neg=0, invalid=1530 0042: dt=4.250000, rms=0.487 (0.141%), neg=0, invalid=1530 0043: dt=4.250000, rms=0.486 (0.137%), neg=0, invalid=1530 0044: dt=4.250000, rms=0.486 (0.134%), neg=0, invalid=1530 0045: dt=4.250000, rms=0.485 (0.130%), neg=0, invalid=1530 0046: dt=4.250000, rms=0.485 (0.127%), neg=0, invalid=1530 0047: dt=4.250000, rms=0.484 (0.123%), neg=0, invalid=1530 0048: dt=4.250000, rms=0.483 (0.120%), neg=0, invalid=1530 0049: dt=4.250000, rms=0.483 (0.117%), neg=0, invalid=1530 0050: dt=4.250000, rms=0.482 (0.114%), neg=0, invalid=1530 0051: dt=4.250000, rms=0.482 (0.111%), neg=0, invalid=1530 0052: dt=4.250000, rms=0.481 (0.108%), neg=0, invalid=1530 0053: dt=4.250000, rms=0.481 (0.105%), neg=0, invalid=1530 0054: dt=4.250000, rms=0.480 (0.103%), neg=0, invalid=1530 0055: dt=4.250000, rms=0.480 (0.100%), neg=0, invalid=1530 0056: dt=4.250000, rms=0.479 (0.098%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.479, neg=0, invalid=1530 0057: dt=2.250000, rms=0.478 (0.288%), neg=0, invalid=1530 0058: dt=2.250000, rms=0.476 (0.350%), neg=0, invalid=1530 0059: dt=2.250000, rms=0.475 (0.354%), neg=0, invalid=1530 0060: dt=2.250000, rms=0.473 (0.344%), neg=0, invalid=1530 0061: dt=2.250000, rms=0.471 (0.331%), neg=0, invalid=1530 0062: dt=2.250000, rms=0.470 (0.318%), neg=0, invalid=1530 0063: dt=2.250000, rms=0.468 (0.306%), neg=0, invalid=1530 0064: dt=2.250000, rms=0.467 (0.294%), neg=0, invalid=1530 0065: dt=2.250000, rms=0.466 (0.282%), neg=0, invalid=1530 0066: dt=2.250000, rms=0.464 (0.271%), neg=0, invalid=1530 0067: dt=2.250000, rms=0.463 (0.261%), neg=0, invalid=1530 0068: dt=2.250000, rms=0.462 (0.251%), neg=0, invalid=1530 0069: dt=2.250000, rms=0.461 (0.241%), neg=0, invalid=1530 0070: dt=2.250000, rms=0.460 (0.232%), neg=0, invalid=1530 0071: dt=2.250000, rms=0.459 (0.223%), neg=0, invalid=1530 0072: dt=2.250000, rms=0.458 (0.215%), neg=0, invalid=1530 0073: dt=2.250000, rms=0.457 (0.207%), neg=0, invalid=1530 0074: dt=2.250000, rms=0.456 (0.199%), neg=0, invalid=1530 0075: dt=2.250000, rms=0.455 (0.192%), neg=0, invalid=1530 0076: dt=2.250000, rms=0.454 (0.185%), neg=0, invalid=1530 0077: dt=2.250000, rms=0.453 (0.178%), neg=0, invalid=1530 0078: dt=2.250000, rms=0.453 (0.172%), neg=0, invalid=1530 0079: dt=2.250000, rms=0.452 (0.166%), neg=0, invalid=1530 0080: dt=2.250000, rms=0.451 (0.160%), neg=0, invalid=1530 0081: dt=2.250000, rms=0.451 (0.154%), neg=0, invalid=1530 0082: dt=2.250000, rms=0.450 (0.149%), neg=0, invalid=1530 0083: dt=2.250000, rms=0.449 (0.144%), neg=0, invalid=1530 0084: dt=2.250000, rms=0.449 (0.139%), neg=0, invalid=1530 0085: dt=2.250000, rms=0.448 (0.134%), neg=0, invalid=1530 0086: dt=2.250000, rms=0.447 (0.130%), neg=0, invalid=1530 0087: dt=2.250000, rms=0.447 (0.126%), neg=0, invalid=1530 0088: dt=2.250000, rms=0.446 (0.122%), neg=0, invalid=1530 0089: dt=2.250000, rms=0.446 (0.118%), neg=0, invalid=1530 0090: dt=2.250000, rms=0.445 (0.114%), neg=0, invalid=1530 0091: dt=2.250000, rms=0.445 (0.110%), neg=0, invalid=1530 0092: dt=2.250000, rms=0.444 (0.107%), neg=0, invalid=1530 0093: dt=2.250000, rms=0.444 (0.103%), neg=0, invalid=1530 0094: dt=2.250000, rms=0.443 (0.100%), neg=0, invalid=1530 0095: dt=2.250000, rms=0.443 (0.097%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.443, neg=0, invalid=1530 0096: dt=1.250000, rms=0.441 (0.339%), neg=0, invalid=1530 0097: dt=1.250000, rms=0.440 (0.409%), neg=0, invalid=1530 0098: dt=1.250000, rms=0.438 (0.411%), neg=0, invalid=1530 0099: dt=1.250000, rms=0.436 (0.395%), neg=0, invalid=1530 0100: dt=1.250000, rms=0.434 (0.376%), neg=0, invalid=1530 0101: dt=1.250000, rms=0.433 (0.357%), neg=0, invalid=1530 0102: dt=1.250000, rms=0.431 (0.339%), neg=0, invalid=1530 0103: dt=1.250000, rms=0.430 (0.322%), neg=0, invalid=1530 0104: dt=1.250000, rms=0.429 (0.306%), neg=0, invalid=1530 0105: dt=1.250000, rms=0.428 (0.291%), neg=0, invalid=1530 0106: dt=1.250000, rms=0.426 (0.277%), neg=0, invalid=1530 0107: dt=1.250000, rms=0.425 (0.264%), neg=0, invalid=1530 0108: dt=1.250000, rms=0.424 (0.252%), neg=0, invalid=1530 0109: dt=1.250000, rms=0.423 (0.241%), neg=0, invalid=1530 0110: dt=1.250000, rms=0.422 (0.230%), neg=0, invalid=1530 0111: dt=1.250000, rms=0.421 (0.220%), neg=0, invalid=1530 0112: dt=1.250000, rms=0.420 (0.210%), neg=0, invalid=1530 0113: dt=1.250000, rms=0.419 (0.201%), neg=0, invalid=1530 0114: dt=1.250000, rms=0.419 (0.193%), neg=0, invalid=1530 0115: dt=1.250000, rms=0.418 (0.185%), neg=0, invalid=1530 0116: dt=1.250000, rms=0.417 (0.178%), neg=0, invalid=1530 0117: dt=1.250000, rms=0.416 (0.171%), neg=0, invalid=1530 0118: dt=1.250000, rms=0.416 (0.164%), neg=0, invalid=1530 0119: dt=1.250000, rms=0.415 (0.157%), neg=0, invalid=1530 0120: dt=1.250000, rms=0.414 (0.151%), neg=0, invalid=1530 0121: dt=1.250000, rms=0.414 (0.146%), neg=0, invalid=1530 0122: dt=1.250000, rms=0.413 (0.140%), neg=0, invalid=1530 0123: dt=1.250000, rms=0.413 (0.135%), neg=0, invalid=1530 0124: dt=1.250000, rms=0.412 (0.130%), neg=0, invalid=1530 0125: dt=1.250000, rms=0.412 (0.126%), neg=0, invalid=1530 0126: dt=1.250000, rms=0.411 (0.122%), neg=0, invalid=1530 0127: dt=1.250000, rms=0.411 (0.117%), neg=0, invalid=1530 0128: dt=1.250000, rms=0.410 (0.114%), neg=0, invalid=1530 0129: dt=1.250000, rms=0.410 (0.110%), neg=0, invalid=1530 0130: dt=1.250000, rms=0.409 (0.106%), neg=0, invalid=1530 0131: dt=1.250000, rms=0.409 (0.103%), neg=0, invalid=1530 0132: dt=1.250000, rms=0.409 (0.099%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.409, neg=0, invalid=1530 0133: dt=0.750000, rms=0.407 (0.323%), neg=0, invalid=1530 0134: dt=0.750000, rms=0.406 (0.384%), neg=0, invalid=1530 0135: dt=0.750000, rms=0.404 (0.378%), neg=0, invalid=1530 0136: dt=0.750000, rms=0.403 (0.355%), neg=0, invalid=1530 0137: dt=0.750000, rms=0.401 (0.330%), neg=0, invalid=1530 0138: dt=0.750000, rms=0.400 (0.305%), neg=0, invalid=1530 0139: dt=0.750000, rms=0.399 (0.283%), neg=0, invalid=1530 0140: dt=0.750000, rms=0.398 (0.262%), neg=0, invalid=1530 0141: dt=0.750000, rms=0.397 (0.243%), neg=0, invalid=1530 0142: dt=0.750000, rms=0.396 (0.226%), neg=0, invalid=1530 0143: dt=0.750000, rms=0.395 (0.210%), neg=0, invalid=1530 0144: dt=0.750000, rms=0.394 (0.196%), neg=0, invalid=1530 0145: dt=0.750000, rms=0.394 (0.183%), neg=0, invalid=1530 0146: dt=0.750000, rms=0.393 (0.171%), neg=0, invalid=1530 0147: dt=0.750000, rms=0.392 (0.160%), neg=0, invalid=1530 0148: dt=0.750000, rms=0.392 (0.150%), neg=0, invalid=1530 0149: dt=0.750000, rms=0.391 (0.141%), neg=0, invalid=1530 0150: dt=0.750000, rms=0.391 (0.133%), neg=0, invalid=1530 0151: dt=0.750000, rms=0.390 (0.125%), neg=0, invalid=1530 0152: dt=0.750000, rms=0.390 (0.118%), neg=0, invalid=1530 0153: dt=0.750000, rms=0.389 (0.111%), neg=0, invalid=1530 0154: dt=0.750000, rms=0.389 (0.105%), neg=0, invalid=1530 0155: dt=0.750000, rms=0.389 (0.099%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.389, neg=0, invalid=1530 0156: dt=0.500000, rms=0.388 (0.247%), neg=0, invalid=1530 0157: dt=0.500000, rms=0.387 (0.278%), neg=0, invalid=1530 0158: dt=0.500000, rms=0.386 (0.251%), neg=0, invalid=1530 0159: dt=0.500000, rms=0.385 (0.214%), neg=0, invalid=1530 0160: dt=0.500000, rms=0.384 (0.180%), neg=0, invalid=1530 0161: dt=0.500000, rms=0.383 (0.152%), neg=0, invalid=1530 0162: dt=0.500000, rms=0.383 (0.131%), neg=0, invalid=1530 0163: dt=0.500000, rms=0.383 (0.114%), neg=0, invalid=1530 0164: dt=0.500000, rms=0.382 (0.102%), neg=0, invalid=1530 0165: dt=0.500000, rms=0.382 (0.091%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.382, neg=0, invalid=1530 0166: dt=0.250000, rms=0.381 (0.164%), neg=0, invalid=1530 0167: dt=0.250000, rms=0.381 (0.128%), neg=0, invalid=1530 0168: dt=0.250000, rms=0.380 (0.070%), neg=0, invalid=1530 **************** pass 2 of 3 ************************ setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.372, neg=0, invalid=1530 0169: dt=4.250000, rms=0.372 (0.058%), neg=0, invalid=1530 0170: dt=4.250000, rms=0.371 (0.067%), neg=0, invalid=1530 0171: dt=4.250000, rms=0.371 (0.063%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.371, neg=0, invalid=1530 0172: dt=2.250000, rms=0.371 (0.151%), neg=0, invalid=1530 0173: dt=2.250000, rms=0.370 (0.178%), neg=0, invalid=1530 0174: dt=2.250000, rms=0.369 (0.174%), neg=0, invalid=1530 0175: dt=2.250000, rms=0.369 (0.164%), neg=0, invalid=1530 0176: dt=2.250000, rms=0.368 (0.153%), neg=0, invalid=1530 0177: dt=2.250000, rms=0.368 (0.144%), neg=0, invalid=1530 0178: dt=2.250000, rms=0.367 (0.135%), neg=0, invalid=1530 0179: dt=2.250000, rms=0.367 (0.127%), neg=0, invalid=1530 0180: dt=2.250000, rms=0.366 (0.120%), neg=0, invalid=1530 0181: dt=2.250000, rms=0.366 (0.114%), neg=0, invalid=1530 0182: dt=2.250000, rms=0.365 (0.109%), neg=0, invalid=1530 0183: dt=2.250000, rms=0.365 (0.103%), neg=0, invalid=1530 0184: dt=2.250000, rms=0.365 (0.099%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.365, neg=0, invalid=1530 0185: dt=1.250000, rms=0.364 (0.283%), neg=0, invalid=1530 0186: dt=1.250000, rms=0.362 (0.340%), neg=0, invalid=1530 0187: dt=1.250000, rms=0.361 (0.340%), neg=0, invalid=1530 0188: dt=1.250000, rms=0.360 (0.326%), neg=0, invalid=1530 0189: dt=1.250000, rms=0.359 (0.310%), neg=0, invalid=1530 0190: dt=1.250000, rms=0.358 (0.294%), neg=0, invalid=1530 0191: dt=1.250000, rms=0.357 (0.279%), neg=0, invalid=1530 0192: dt=1.250000, rms=0.356 (0.265%), neg=0, invalid=1530 0193: dt=1.250000, rms=0.355 (0.252%), neg=0, invalid=1530 0194: dt=1.250000, rms=0.354 (0.240%), neg=0, invalid=1530 0195: dt=1.250000, rms=0.353 (0.229%), neg=0, invalid=1530 0196: dt=1.250000, rms=0.352 (0.218%), neg=0, invalid=1530 0197: dt=1.250000, rms=0.352 (0.208%), neg=0, invalid=1530 0198: dt=1.250000, rms=0.351 (0.199%), neg=0, invalid=1530 0199: dt=1.250000, rms=0.350 (0.191%), neg=1, invalid=1530 0200: dt=1.250000, rms=0.350 (0.183%), neg=3, invalid=1530 0201: dt=1.250000, rms=0.349 (0.175%), neg=6, invalid=1530 0202: dt=1.250000, rms=0.348 (0.168%), neg=13, invalid=1530 0203: dt=1.250000, rms=0.348 (0.162%), neg=15, invalid=1530 0204: dt=1.250000, rms=0.347 (0.156%), neg=18, invalid=1530 0205: dt=1.250000, rms=0.347 (0.150%), neg=22, invalid=1530 0206: dt=1.250000, rms=0.346 (0.145%), neg=26, invalid=1530 0207: dt=1.250000, rms=0.346 (0.139%), neg=32, invalid=1530 0208: dt=1.250000, rms=0.345 (0.135%), neg=41, invalid=1530 0209: dt=1.250000, rms=0.345 (0.130%), neg=48, invalid=1530 0210: dt=1.250000, rms=0.345 (0.126%), neg=61, invalid=1530 0211: dt=1.250000, rms=0.344 (0.122%), neg=69, invalid=1530 0212: dt=1.250000, rms=0.344 (0.118%), neg=83, invalid=1530 0213: dt=1.250000, rms=0.343 (0.114%), neg=101, invalid=1530 0214: dt=1.250000, rms=0.343 (0.110%), neg=106, invalid=1530 0215: dt=1.250000, rms=0.343 (0.107%), neg=116, invalid=1530 0216: dt=1.250000, rms=0.342 (0.104%), neg=126, invalid=1530 0217: dt=1.250000, rms=0.342 (0.100%), neg=136, invalid=1530 0218: dt=1.250000, rms=0.342 (0.097%), neg=146, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.342, neg=146, invalid=1530 0219: dt=0.750000, rms=0.340 (0.316%), neg=128, invalid=1530 0220: dt=0.750000, rms=0.339 (0.380%), neg=116, invalid=1530 0221: dt=0.750000, rms=0.338 (0.380%), neg=123, invalid=1530 0222: dt=0.750000, rms=0.337 (0.365%), neg=124, invalid=1530 0223: dt=0.750000, rms=0.335 (0.346%), neg=132, invalid=1530 0224: dt=0.750000, rms=0.334 (0.328%), neg=143, invalid=1530 0225: dt=0.750000, rms=0.333 (0.310%), neg=154, invalid=1530 0226: dt=0.750000, rms=0.332 (0.294%), neg=175, invalid=1530 0227: dt=0.750000, rms=0.331 (0.278%), neg=191, invalid=1530 0228: dt=0.750000, rms=0.331 (0.264%), neg=206, invalid=1530 0229: dt=0.750000, rms=0.330 (0.250%), neg=224, invalid=1530 0230: dt=0.750000, rms=0.329 (0.237%), neg=248, invalid=1530 0231: dt=0.750000, rms=0.328 (0.225%), neg=271, invalid=1530 0232: dt=0.750000, rms=0.328 (0.214%), neg=297, invalid=1530 0233: dt=0.750000, rms=0.327 (0.203%), neg=328, invalid=1530 0234: dt=0.750000, rms=0.326 (0.193%), neg=354, invalid=1530 0235: dt=0.750000, rms=0.326 (0.184%), neg=384, invalid=1530 0236: dt=0.750000, rms=0.325 (0.175%), neg=419, invalid=1530 0237: dt=0.750000, rms=0.325 (0.167%), neg=444, invalid=1530 0238: dt=0.750000, rms=0.324 (0.159%), neg=460, invalid=1530 0239: dt=0.750000, rms=0.323 (0.152%), neg=479, invalid=1530 0240: dt=0.750000, rms=0.323 (0.145%), neg=491, invalid=1530 0241: dt=0.750000, rms=0.323 (0.139%), neg=516, invalid=1530 0242: dt=0.750000, rms=0.322 (0.133%), neg=536, invalid=1530 0243: dt=0.750000, rms=0.322 (0.128%), neg=561, invalid=1530 0244: dt=0.750000, rms=0.321 (0.123%), neg=581, invalid=1530 0245: dt=0.750000, rms=0.321 (0.118%), neg=596, invalid=1530 0246: dt=0.750000, rms=0.321 (0.113%), neg=608, invalid=1530 0247: dt=0.750000, rms=0.320 (0.109%), neg=626, invalid=1530 0248: dt=0.750000, rms=0.320 (0.104%), neg=634, invalid=1530 0249: dt=0.750000, rms=0.320 (0.100%), neg=642, invalid=1530 0250: dt=0.750000, rms=0.319 (0.097%), neg=657, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.319, neg=657, invalid=1530 0251: dt=0.500000, rms=0.318 (0.285%), neg=524, invalid=1530 0252: dt=0.500000, rms=0.317 (0.335%), neg=406, invalid=1530 0253: dt=0.500000, rms=0.316 (0.325%), neg=303, invalid=1530 0254: dt=0.500000, rms=0.315 (0.302%), neg=240, invalid=1530 0255: dt=0.500000, rms=0.314 (0.278%), neg=188, invalid=1530 0256: dt=0.500000, rms=0.314 (0.255%), neg=156, invalid=1530 0257: dt=0.500000, rms=0.313 (0.234%), neg=129, invalid=1530 0258: dt=0.500000, rms=0.312 (0.215%), neg=104, invalid=1530 0259: dt=0.500000, rms=0.312 (0.199%), neg=92, invalid=1530 0260: dt=0.500000, rms=0.311 (0.184%), neg=79, invalid=1530 0261: dt=0.500000, rms=0.311 (0.170%), neg=72, invalid=1530 0262: dt=0.500000, rms=0.310 (0.158%), neg=61, invalid=1530 0263: dt=0.500000, rms=0.310 (0.148%), neg=55, invalid=1530 0264: dt=0.500000, rms=0.309 (0.138%), neg=53, invalid=1530 0265: dt=0.500000, rms=0.309 (0.129%), neg=50, invalid=1530 0266: dt=0.500000, rms=0.308 (0.121%), neg=45, invalid=1530 0267: dt=0.500000, rms=0.308 (0.113%), neg=41, invalid=1530 0268: dt=0.500000, rms=0.308 (0.106%), neg=38, invalid=1530 0269: dt=0.500000, rms=0.307 (0.100%), neg=32, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=0.307, neg=32, invalid=1530 0270: dt=0.250000, rms=0.307 (0.207%), neg=14, invalid=1530 0271: dt=0.250000, rms=0.306 (0.228%), neg=2, invalid=1530 0272: dt=0.250000, rms=0.305 (0.197%), neg=5, invalid=1530 0273: dt=0.250000, rms=0.305 (0.162%), neg=0, invalid=1530 0274: dt=0.250000, rms=0.305 (0.130%), neg=1, invalid=1530 0275: dt=0.250000, rms=0.304 (0.106%), neg=0, invalid=1530 0276: dt=0.250000, rms=0.304 (0.087%), neg=1, invalid=1530 **************** pass 3 of 3 ************************ enabling zero nodes setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=1.580, neg=1, invalid=1530 0277: dt=4.250000, rms=1.479 (6.385%), neg=1, invalid=1530 0278: dt=4.250000, rms=1.373 (7.191%), neg=1, invalid=1530 0279: dt=4.250000, rms=1.373 (-34.988%), neg=1, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=1.373, neg=1, invalid=1530 0280: dt=2.250000, rms=1.373 (-5.923%), neg=1, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=1.373, neg=1, invalid=1530 0281: dt=1.250000, rms=1.335 (2.725%), neg=1, invalid=1530 0282: dt=1.250000, rms=1.335 (-4.351%), neg=1, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=1.335, neg=1, invalid=1530 0283: dt=0.750000, rms=1.312 (1.782%), neg=2, invalid=1530 0284: dt=0.750000, rms=1.301 (0.840%), neg=3, invalid=1530 0285: dt=0.750000, rms=1.291 (0.755%), neg=4, invalid=1530 0286: dt=0.750000, rms=1.261 (2.327%), neg=6, invalid=1530 0287: dt=0.750000, rms=1.261 (-0.808%), neg=6, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=1.261, neg=6, invalid=1530 0288: dt=0.500000, rms=1.224 (2.904%), neg=6, invalid=1530 0289: dt=0.500000, rms=1.222 (0.201%), neg=8, invalid=1530 0290: dt=0.500000, rms=1.222 (-1.713%), neg=8, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=0.250... 0000: dt=0.000, rms=1.222, neg=8, invalid=1530 0291: dt=0.250000, rms=1.222 (-0.654%), neg=8, invalid=1530 integration complete, checking for and removing negative nodes (noneg = -1) writing transformed output volume to CVS/nlalign-aseg.mgz... writing warp vector field to CVS/nlalign-aseg.m3z GCAMwrite registration took 180 minutes and 1 seconds. createMorph --out CVS/combined_toSynthF_elreg_aseg.tm3d --template /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz --subject /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz --in gcam CVS/nlalign-aseg.m3z morph CVS/el_reg_toSynthF.tm3d setting orig areas to linear transform determinant scaled 1.00 atlas geometry = 256 , 256 , 256 image geometry = 256 , 256 , 256 vox 2 ras atlas = -1.00000 0.00000 0.00000 127.00000; 0.00000 0.00000 1.00000 -145.00000; 0.00000 -1.00000 0.00000 147.00000; 0.00000 0.00000 0.00000 1.00000; ras 2 vox image = -1.00000 -0.00000 -0.00000 127.00000; -0.00000 -0.00000 -1.00000 147.00000; -0.00000 1.00000 -0.00000 145.00000; -0.00000 -0.00000 -0.00000 1.00000; product = 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; transform at origin 0.00000; 0.00000; 0.00000; 1.00000; invalid voxel count = 0 extension = tm3d data size = 16 uilen = 3 loading transform id string = data size = 22263661 uilen = 24 loading transform id string = compressed_step_17 data size = 21956561 uilen = 24 loading transform id string = compressed_step_16 data size = 21623905 uilen = 24 loading transform id string = compressed_step_15 data size = 21352974 uilen = 24 loading transform id string = compressed_step_14 data size = 21100000 uilen = 24 loading transform id string = compressed_step_13 data size = 20819833 uilen = 24 loading transform id string = compressed_step_12 data size = 20578742 uilen = 24 loading transform id string = compressed_step_11 data size = 20343578 uilen = 24 loading transform id string = compressed_step_10 data size = 20090826 uilen = 23 loading transform id string = compressed_step_9 data size = 19864537 uilen = 23 loading transform id string = compressed_step_8 data size = 19617743 uilen = 23 loading transform id string = compressed_step_7 data size = 19412803 uilen = 23 loading transform id string = compressed_step_6 data size = 19216384 uilen = 23 loading transform id string = compressed_step_5 data size = 19079471 uilen = 23 loading transform id string = compressed_step_4 data size = 18934740 uilen = 23 loading transform id string = compressed_step_3 data size = 19185422 uilen = 23 loading transform id string = compressed_step_2 data size = 20406681 uilen = 23 loading transform id string = compressed_step_1 data size = 19670144 uilen = 23 loading transform id string = compressed_step_0 data size = 71 uilen = 7 loading transform id string = saveTransform code writing transform size = 106320095 saveTransform code writing transform size = 16 saveTransform code writing transform size = 22263622 saveTransform code writing transform size = 21956463 saveTransform code writing transform size = 21623865 saveTransform code writing transform size = 21352955 saveTransform code writing transform size = 21100003 saveTransform code writing transform size = 20819807 saveTransform code writing transform size = 20578694 saveTransform code writing transform size = 20343570 saveTransform code writing transform size = 20090722 saveTransform code writing transform size = 19864509 saveTransform code writing transform size = 19617775 saveTransform code writing transform size = 19412752 saveTransform code writing transform size = 19216332 saveTransform code writing transform size = 19079492 saveTransform code writing transform size = 18934698 saveTransform code writing transform size = 19185423 saveTransform code writing transform size = 20406705 saveTransform code writing transform size = 19670111 saveTransform code writing transform size = 71 writing morph to file CVS/combined_toSynthF_elreg_aseg.tm3d exportGcam --fixed /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz --moving /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz --morph CVS/combined_toSynthF_elreg_aseg.tm3d --out_gcam CVS/combined_toSynthF_elreg_aseg.m3z using bounding box no extension = tm3d data size = 106320095 uilen = 6 loading transform id string = data size = 16 uilen = 3 loading transform id string = data size = 22263622 uilen = 6 loading transform id string = data size = 21956463 uilen = 6 loading transform id string = data size = 21623865 uilen = 6 loading transform id string = data size = 21352955 uilen = 6 loading transform id string = data size = 21100003 uilen = 6 loading transform id string = data size = 20819807 uilen = 6 loading transform id string = data size = 20578694 uilen = 6 loading transform id string = data size = 20343570 uilen = 6 loading transform id string = data size = 20090722 uilen = 6 loading transform id string = data size = 19864509 uilen = 6 loading transform id string = data size = 19617775 uilen = 6 loading transform id string = data size = 19412752 uilen = 6 loading transform id string = data size = 19216332 uilen = 6 loading transform id string = data size = 19079492 uilen = 6 loading transform id string = data size = 18934698 uilen = 6 loading transform id string = data size = 19185423 uilen = 6 loading transform id string = data size = 20406705 uilen = 6 loading transform id string = data size = 19670111 uilen = 6 loading transform id string = data size = 71 uilen = 7 loading transform id string = exportGcam: padding is = 1 VolumeMorph::exportGcam -> no mriCache - this will take some time z = 0 z = 10 z = 20 z = 30 z = 40 z = 50 z = 60 z = 70 z = 80 z = 90 z = 100 z = 110 z = 120 z = 130 z = 140 z = 150 z = 160 z = 170 z = 180 z = 190 z = 200 z = 210 z = 220 z = 230 z = 240 z = 250 Invalid voxels = 5629419 Valid = 10813292 Not using bounding box box = 0 , 0 , 0 256 , 256 , 256 gcam export invalid voxels = 5963924 GCAMwrite trimming scaling estimates to be in [-4.3188 6.5500] renormalizing gcam intensities by 1.0037 renormalizing gcam intensities using histo estimate 1.0050 skipping tmpout2.mgz - using bounding box Export performed in 3.01712 minutes mri_vol2vol --targ /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz --m3z CVS/combined_toSynthF_elreg_aseg.m3z --noDefM3zPath --mov /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz --o CVS/step1_CVSmorphed_toSynthF_aseg.mgz --interp nearest --no-save-reg Using the m3z file as it is; no assumed location. movvol /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz targvol /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz outvol CVS/step1_CVSmorphed_toSynthF_aseg.mgz invert 0 tal 0 talres 2 regheader 0 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Morphing InvertMorph 0 Synth 0 SynthSeed 1482042259 Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Reading gcam setting orig areas to linear transform determinant scaled 1.00 Applying reg to gcam Applying morph to input Output registration matrix is identity mri_vol2vol done mri_vol2vol --targ /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz --m3z CVS/combined_toSynthF_elreg_aseg.m3z --noDefM3zPath --mov /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz --o CVS/step1_CVSmorphed_toSynthF_norm.mgz --interp trilin --no-save-reg Using the m3z file as it is; no assumed location. movvol /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz targvol /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz outvol CVS/step1_CVSmorphed_toSynthF_norm.mgz invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilin (1) precision float (3) Gdiag_no -1 Morphing InvertMorph 0 Synth 0 SynthSeed 1482477446 Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Reading gcam setting orig areas to linear transform determinant scaled 1.00 Applying reg to gcam Applying morph to input Output registration matrix is identity mri_vol2vol done mri_nl_align -renormalize 1 -apply 1 -z 1 -sigma 2 -dt 0.0001 -intensity 0.1 -T /usr/local/freesurfer/bin/id.xfm CVS/step1_CVSmorphed_toSynthF_norm.mgz /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz CVS/nlalign-afteraseg-norm.m3z ======= NUMBER OF OPENMP THREADS = 8 ======= renormalizing intensities applying transform after registration not disabling zero image locations using sigma=2.000 using dt = 0.000 setting l_log_likelihood = 0.100 reading transform from /usr/local/freesurfer/bin/id.xfm... source mean = 71.7, target mean = 74.0, scaling by 1.032 converting ras xform to voxel xform initializing GCAM with vox->vox matrix: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; det(m_affine) = 1.00 (predicted orig area = 1.0) trimming scaling estimates to be in [-0.8361 3.1389] renormalizing gcam intensities by 1.0808 renormalizing gcam intensities using histo estimate 0.9799 **************** pass 1 of 3 ************************ enabling zero nodes setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=1.021, neg=0, invalid=1530 0001: dt=93.153025, rms=0.983 (3.712%), neg=0, invalid=1530 0002: dt=132.526167, rms=0.977 (0.598%), neg=0, invalid=1530 0003: dt=56.819712, rms=0.977 (0.031%), neg=0, invalid=1530 0004: dt=56.819712, rms=0.976 (0.044%), neg=0, invalid=1530 0005: dt=56.819712, rms=0.976 (0.047%), neg=0, invalid=1530 0006: dt=56.819712, rms=0.976 (0.008%), neg=0, invalid=1530 0007: dt=56.819712, rms=0.976 (-0.048%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.976, neg=0, invalid=1530 0008: dt=126.451045, rms=0.969 (0.709%), neg=0, invalid=1530 0009: dt=69.333333, rms=0.968 (0.138%), neg=0, invalid=1530 0010: dt=265.158656, rms=0.965 (0.215%), neg=0, invalid=1530 0011: dt=37.879808, rms=0.965 (0.019%), neg=0, invalid=1530 0012: dt=37.879808, rms=0.965 (0.005%), neg=0, invalid=1530 0013: dt=37.879808, rms=0.965 (0.007%), neg=0, invalid=1530 0014: dt=37.879808, rms=0.965 (0.014%), neg=0, invalid=1530 0015: dt=37.879808, rms=0.965 (0.023%), neg=0, invalid=1530 0016: dt=37.879808, rms=0.965 (0.027%), neg=0, invalid=1530 0017: dt=37.879808, rms=0.964 (0.025%), neg=0, invalid=1530 0018: dt=37.879808, rms=0.964 (0.021%), neg=0, invalid=1530 0019: dt=56.819712, rms=0.964 (0.001%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.964, neg=0, invalid=1530 0020: dt=42.467328, rms=0.957 (0.690%), neg=0, invalid=1530 0021: dt=101.224490, rms=0.951 (0.707%), neg=0, invalid=1530 0022: dt=42.467328, rms=0.949 (0.158%), neg=0, invalid=1530 0023: dt=74.317824, rms=0.944 (0.504%), neg=0, invalid=1530 0024: dt=18.579456, rms=0.944 (0.043%), neg=0, invalid=1530 0025: dt=18.579456, rms=0.943 (0.053%), neg=0, invalid=1530 0026: dt=18.579456, rms=0.943 (0.102%), neg=0, invalid=1530 0027: dt=18.579456, rms=0.941 (0.155%), neg=0, invalid=1530 0028: dt=18.579456, rms=0.939 (0.204%), neg=0, invalid=1530 0029: dt=18.579456, rms=0.937 (0.232%), neg=0, invalid=1530 0030: dt=18.579456, rms=0.935 (0.235%), neg=0, invalid=1530 0031: dt=18.579456, rms=0.934 (0.029%), neg=0, invalid=1530 0032: dt=18.579456, rms=0.934 (0.060%), neg=0, invalid=1530 0033: dt=18.579456, rms=0.933 (0.096%), neg=0, invalid=1530 0034: dt=18.579456, rms=0.932 (0.132%), neg=0, invalid=1530 0035: dt=18.579456, rms=0.930 (0.156%), neg=0, invalid=1530 0036: dt=18.579456, rms=0.929 (0.162%), neg=0, invalid=1530 0037: dt=18.579456, rms=0.927 (0.155%), neg=0, invalid=1530 0038: dt=18.579456, rms=0.926 (0.142%), neg=0, invalid=1530 0039: dt=18.579456, rms=0.925 (0.131%), neg=0, invalid=1530 0040: dt=18.579456, rms=0.924 (0.127%), neg=0, invalid=1530 0041: dt=18.579456, rms=0.922 (0.129%), neg=0, invalid=1530 0042: dt=18.579456, rms=0.921 (0.129%), neg=0, invalid=1530 0043: dt=18.579456, rms=0.920 (0.122%), neg=0, invalid=1530 0044: dt=18.579456, rms=0.919 (0.111%), neg=0, invalid=1530 0045: dt=18.579456, rms=0.918 (0.099%), neg=0, invalid=1530 0046: dt=18.579456, rms=0.917 (0.090%), neg=0, invalid=1530 0047: dt=18.579456, rms=0.917 (0.088%), neg=0, invalid=1530 0048: dt=18.579456, rms=0.916 (0.088%), neg=0, invalid=1530 0049: dt=18.579456, rms=0.915 (0.085%), neg=0, invalid=1530 0050: dt=18.579456, rms=0.914 (0.076%), neg=0, invalid=1530 0051: dt=18.579456, rms=0.914 (0.064%), neg=0, invalid=1530 0052: dt=18.579456, rms=0.913 (0.052%), neg=0, invalid=1530 0053: dt=18.579456, rms=0.913 (0.044%), neg=0, invalid=1530 0054: dt=18.579456, rms=0.912 (0.041%), neg=0, invalid=1530 0055: dt=74.317824, rms=0.912 (0.021%), neg=0, invalid=1530 0056: dt=74.317824, rms=0.912 (-0.025%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.912, neg=0, invalid=1530 0057: dt=74.317824, rms=0.898 (1.580%), neg=0, invalid=1530 0058: dt=15.925248, rms=0.897 (0.081%), neg=0, invalid=1530 0059: dt=15.925248, rms=0.897 (0.005%), neg=0, invalid=1530 0060: dt=15.925248, rms=0.897 (-0.036%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.897, neg=0, invalid=1530 0061: dt=19.660800, rms=0.892 (0.600%), neg=0, invalid=1530 0062: dt=5.734400, rms=0.889 (0.358%), neg=0, invalid=1530 0063: dt=1.433600, rms=0.888 (0.079%), neg=0, invalid=1530 0064: dt=1.433600, rms=0.887 (0.077%), neg=0, invalid=1530 0065: dt=0.716800, rms=0.887 (0.037%), neg=0, invalid=1530 0066: dt=0.179200, rms=0.887 (0.009%), neg=0, invalid=1530 0067: dt=0.089600, rms=0.887 (0.005%), neg=0, invalid=1530 0068: dt=0.022400, rms=0.887 (0.001%), neg=0, invalid=1530 0069: dt=0.000700, rms=0.887 (0.000%), neg=0, invalid=1530 0070: dt=0.000350, rms=0.887 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.887, neg=0, invalid=1530 0071: dt=41.351598, rms=0.862 (2.784%), neg=0, invalid=1530 0072: dt=1.433600, rms=0.861 (0.125%), neg=0, invalid=1530 0073: dt=1.024000, rms=0.860 (0.079%), neg=0, invalid=1530 0074: dt=0.128000, rms=0.860 (0.009%), neg=0, invalid=1530 0075: dt=0.032000, rms=0.860 (0.002%), neg=0, invalid=1530 0076: dt=0.016000, rms=0.860 (0.001%), neg=0, invalid=1530 0077: dt=0.005600, rms=0.860 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.860, neg=0, invalid=1530 0078: dt=0.023040, rms=0.860 (0.014%), neg=0, invalid=1530 0079: dt=0.002016, rms=0.860 (0.001%), neg=0, invalid=1530 0080: dt=0.001008, rms=0.860 (0.001%), neg=0, invalid=1530 0081: dt=0.000504, rms=0.860 (0.000%), neg=0, invalid=1530 0082: dt=0.000126, rms=0.860 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.860, neg=0, invalid=1530 0083: dt=2.064384, rms=0.849 (1.239%), neg=0, invalid=1530 0084: dt=7.077888, rms=0.820 (3.488%), neg=0, invalid=1530 0085: dt=2.064384, rms=0.814 (0.720%), neg=0, invalid=1530 0086: dt=0.516096, rms=0.813 (0.163%), neg=0, invalid=1530 0087: dt=0.516096, rms=0.811 (0.159%), neg=0, invalid=1530 0088: dt=0.129024, rms=0.811 (0.039%), neg=0, invalid=1530 0089: dt=0.016128, rms=0.811 (0.005%), neg=0, invalid=1530 0090: dt=0.002016, rms=0.811 (0.001%), neg=0, invalid=1530 0091: dt=0.001008, rms=0.811 (0.000%), neg=0, invalid=1530 0092: dt=0.000360, rms=0.811 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.811, neg=0, invalid=1530 0093: dt=0.917504, rms=0.804 (0.867%), neg=0, invalid=1530 0094: dt=2.621440, rms=0.787 (2.100%), neg=0, invalid=1530 0095: dt=0.917504, rms=0.783 (0.473%), neg=0, invalid=1530 0096: dt=0.917504, rms=0.780 (0.432%), neg=0, invalid=1530 0097: dt=0.917504, rms=0.777 (0.379%), neg=0, invalid=1530 0098: dt=1.804348, rms=0.772 (0.623%), neg=0, invalid=1530 0099: dt=1.239130, rms=0.770 (0.297%), neg=0, invalid=1530 0100: dt=1.175000, rms=0.768 (0.251%), neg=0, invalid=1530 0101: dt=0.917504, rms=0.767 (0.163%), neg=0, invalid=1530 0102: dt=0.928571, rms=0.765 (0.153%), neg=0, invalid=1530 0103: dt=0.917504, rms=0.764 (0.133%), neg=0, invalid=1530 0104: dt=0.917504, rms=0.763 (0.123%), neg=0, invalid=1530 0105: dt=0.917504, rms=0.763 (0.108%), neg=0, invalid=1530 0106: dt=0.917504, rms=0.762 (0.101%), neg=0, invalid=1530 0107: dt=0.917504, rms=0.761 (0.090%), neg=0, invalid=1530 0108: dt=0.917504, rms=0.761 (0.083%), neg=0, invalid=1530 0109: dt=0.917504, rms=0.759 (0.147%), neg=0, invalid=1530 0110: dt=0.917504, rms=0.758 (0.182%), neg=0, invalid=1530 0111: dt=0.917504, rms=0.758 (0.031%), neg=0, invalid=1530 0112: dt=0.917504, rms=0.757 (0.063%), neg=0, invalid=1530 0113: dt=0.917504, rms=0.757 (0.098%), neg=0, invalid=1530 0114: dt=0.917504, rms=0.756 (0.037%), neg=0, invalid=1530 0115: dt=0.917504, rms=0.756 (0.057%), neg=0, invalid=1530 0116: dt=0.917504, rms=0.756 (0.017%), neg=0, invalid=1530 0117: dt=0.458752, rms=0.756 (0.012%), neg=0, invalid=1530 0118: dt=0.229376, rms=0.756 (0.006%), neg=0, invalid=1530 0119: dt=0.114688, rms=0.756 (0.003%), neg=0, invalid=1530 0120: dt=0.014336, rms=0.756 (0.000%), neg=0, invalid=1530 0121: dt=0.007168, rms=0.756 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.756, neg=0, invalid=1530 0122: dt=0.003072, rms=0.756 (0.002%), neg=0, invalid=1530 0123: dt=0.000224, rms=0.756 (0.000%), neg=0, invalid=1530 0124: dt=0.000112, rms=0.756 (0.000%), neg=0, invalid=1530 0125: dt=0.000056, rms=0.756 (0.000%), neg=0, invalid=1530 0126: dt=0.000007, rms=0.756 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.756, neg=0, invalid=1530 0127: dt=0.229376, rms=0.755 (0.027%), neg=0, invalid=1530 0128: dt=0.196608, rms=0.755 (0.031%), neg=0, invalid=1530 0129: dt=0.057344, rms=0.755 (0.005%), neg=0, invalid=1530 0130: dt=0.007168, rms=0.755 (0.001%), neg=0, invalid=1530 0131: dt=0.001792, rms=0.755 (0.000%), neg=0, invalid=1530 0132: dt=0.000896, rms=0.755 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.755, neg=0, invalid=1530 0133: dt=0.000056, rms=0.755 (0.000%), neg=0, invalid=1530 0134: dt=0.000056, rms=0.755 (0.000%), neg=0, invalid=1530 0135: dt=0.000014, rms=0.755 (0.000%), neg=0, invalid=1530 0136: dt=0.000001, rms=0.755 (0.000%), neg=0, invalid=1530 0137: dt=0.000000, rms=0.755 (0.000%), neg=0, invalid=1530 **************** pass 2 of 3 ************************ setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.727, neg=0, invalid=1530 0138: dt=0.001012, rms=0.727 (0.000%), neg=0, invalid=1530 0139: dt=0.000217, rms=0.727 (0.000%), neg=0, invalid=1530 0140: dt=0.000217, rms=0.727 (-0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.727, neg=0, invalid=1530 0141: dt=73.220339, rms=0.724 (0.362%), neg=0, invalid=1530 0142: dt=16.572416, rms=0.724 (0.016%), neg=0, invalid=1530 0143: dt=16.572416, rms=0.724 (0.007%), neg=0, invalid=1530 0144: dt=16.572416, rms=0.724 (0.004%), neg=0, invalid=1530 0145: dt=16.572416, rms=0.724 (0.005%), neg=0, invalid=1530 0146: dt=16.572416, rms=0.724 (0.021%), neg=0, invalid=1530 0147: dt=16.572416, rms=0.723 (0.037%), neg=0, invalid=1530 0148: dt=16.572416, rms=0.723 (0.037%), neg=0, invalid=1530 0149: dt=16.572416, rms=0.723 (0.023%), neg=0, invalid=1530 0150: dt=-0.000023, rms=0.723 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.723, neg=0, invalid=1530 0151: dt=1.161216, rms=0.723 (0.001%), neg=0, invalid=1530 0152: dt=0.290304, rms=0.723 (0.000%), neg=0, invalid=1530 0153: dt=0.290304, rms=0.723 (0.000%), neg=0, invalid=1530 0154: dt=0.290304, rms=0.723 (-0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.723, neg=0, invalid=1530 0155: dt=18.579456, rms=0.721 (0.246%), neg=0, invalid=1530 0156: dt=18.579456, rms=0.720 (0.183%), neg=0, invalid=1530 0157: dt=18.579456, rms=0.719 (0.137%), neg=0, invalid=1530 0158: dt=18.579456, rms=0.718 (0.114%), neg=0, invalid=1530 0159: dt=4.644864, rms=0.718 (0.024%), neg=0, invalid=1530 0160: dt=2.322432, rms=0.718 (0.012%), neg=0, invalid=1530 0161: dt=1.161216, rms=0.718 (0.006%), neg=0, invalid=1530 0162: dt=0.580608, rms=0.718 (0.003%), neg=0, invalid=1530 0163: dt=0.018144, rms=0.718 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.718, neg=0, invalid=1530 0164: dt=0.000087, rms=0.718 (0.000%), neg=0, invalid=1530 0165: dt=0.000087, rms=0.718 (0.000%), neg=0, invalid=1530 0166: dt=0.000044, rms=0.718 (0.000%), neg=0, invalid=1530 0167: dt=0.000022, rms=0.718 (0.000%), neg=0, invalid=1530 0168: dt=0.000001, rms=0.718 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.718, neg=0, invalid=1530 0169: dt=0.000001, rms=0.718 (0.000%), neg=0, invalid=1530 0170: dt=0.000000, rms=0.718 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.718, neg=0, invalid=1530 0171: dt=0.000000, rms=0.718 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.718, neg=0, invalid=1530 0172: dt=0.000000, rms=0.718 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.718, neg=0, invalid=1530 0173: dt=0.655360, rms=0.709 (1.171%), neg=0, invalid=1530 0174: dt=0.014336, rms=0.709 (0.023%), neg=0, invalid=1530 0175: dt=0.014336, rms=0.709 (0.023%), neg=0, invalid=1530 0176: dt=0.007168, rms=0.709 (0.012%), neg=0, invalid=1530 0177: dt=0.000028, rms=0.709 (0.000%), neg=0, invalid=1530 0178: dt=0.000004, rms=0.709 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.709, neg=0, invalid=1530 0179: dt=0.917504, rms=0.696 (1.839%), neg=0, invalid=1530 0180: dt=0.917504, rms=0.685 (1.622%), neg=0, invalid=1530 0181: dt=0.917504, rms=0.675 (1.418%), neg=0, invalid=1530 0182: dt=0.655360, rms=0.669 (0.894%), neg=0, invalid=1530 0183: dt=0.057344, rms=0.668 (0.072%), neg=0, invalid=1530 0184: dt=0.057344, rms=0.668 (0.072%), neg=0, invalid=1530 0185: dt=0.003584, rms=0.668 (0.004%), neg=0, invalid=1530 0186: dt=0.001792, rms=0.668 (0.002%), neg=0, invalid=1530 0187: dt=0.000640, rms=0.668 (0.001%), neg=0, invalid=1530 0188: dt=0.000080, rms=0.668 (0.000%), neg=0, invalid=1530 0189: dt=0.000040, rms=0.668 (0.000%), neg=0, invalid=1530 0190: dt=0.000000, rms=0.668 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.500 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.668, neg=0, invalid=1530 0191: dt=0.163840, rms=0.666 (0.238%), neg=0, invalid=1530 0192: dt=0.229376, rms=0.664 (0.343%), neg=0, invalid=1530 0193: dt=0.163840, rms=0.663 (0.222%), neg=0, invalid=1530 0194: dt=0.229376, rms=0.661 (0.302%), neg=0, invalid=1530 0195: dt=0.163840, rms=0.659 (0.188%), neg=0, invalid=1530 0196: dt=0.163840, rms=0.658 (0.188%), neg=0, invalid=1530 0197: dt=0.163840, rms=0.657 (0.169%), neg=0, invalid=1530 0198: dt=0.163840, rms=0.656 (0.160%), neg=0, invalid=1530 0199: dt=0.163840, rms=0.655 (0.146%), neg=0, invalid=1530 0200: dt=0.163840, rms=0.654 (0.141%), neg=0, invalid=1530 0201: dt=0.163840, rms=0.653 (0.130%), neg=0, invalid=1530 0202: dt=0.163840, rms=0.652 (0.125%), neg=0, invalid=1530 0203: dt=0.163840, rms=0.652 (0.116%), neg=0, invalid=1530 0204: dt=0.163840, rms=0.651 (0.112%), neg=0, invalid=1530 0205: dt=0.172619, rms=0.650 (0.110%), neg=0, invalid=1530 0206: dt=0.196608, rms=0.649 (0.119%), neg=0, invalid=1530 0207: dt=0.057344, rms=0.649 (0.034%), neg=0, invalid=1530 0208: dt=0.057344, rms=0.649 (0.038%), neg=0, invalid=1530 0209: dt=0.001792, rms=0.649 (0.001%), neg=0, invalid=1530 0210: dt=0.000448, rms=0.649 (0.000%), neg=0, invalid=1530 0211: dt=0.000014, rms=0.649 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.649, neg=0, invalid=1530 0212: dt=0.229376, rms=0.646 (0.515%), neg=0, invalid=1530 0213: dt=0.229376, rms=0.643 (0.461%), neg=0, invalid=1530 0214: dt=0.196608, rms=0.640 (0.369%), neg=0, invalid=1530 0215: dt=0.229376, rms=0.638 (0.404%), neg=0, invalid=1530 0216: dt=0.229376, rms=0.635 (0.378%), neg=0, invalid=1530 0217: dt=0.229376, rms=0.633 (0.355%), neg=0, invalid=1530 0218: dt=0.014336, rms=0.633 (0.022%), neg=0, invalid=1530 0219: dt=0.014336, rms=0.633 (0.022%), neg=0, invalid=1530 0220: dt=0.007168, rms=0.633 (0.011%), neg=0, invalid=1530 0221: dt=0.003584, rms=0.633 (0.006%), neg=0, invalid=1530 0222: dt=0.000896, rms=0.633 (0.001%), neg=0, invalid=1530 **************** pass 3 of 3 ************************ setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0223: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0224: dt=4.143104, rms=0.615 (0.001%), neg=0, invalid=1530 0225: dt=3.551232, rms=0.615 (0.000%), neg=0, invalid=1530 0226: dt=3.551232, rms=0.615 (-0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0227: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0228: dt=4.644864, rms=0.615 (0.045%), neg=0, invalid=1530 0229: dt=1.161216, rms=0.615 (0.009%), neg=0, invalid=1530 0230: dt=0.580608, rms=0.615 (0.004%), neg=0, invalid=1530 0231: dt=0.290304, rms=0.615 (0.002%), neg=0, invalid=1530 0232: dt=0.145152, rms=0.615 (0.001%), neg=0, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0233: dt=0.000250, rms=0.615 (0.000%), neg=0, invalid=1530 0234: dt=0.000019, rms=0.615 (0.000%), neg=0, invalid=1530 0235: dt=0.000002, rms=0.615 (0.000%), neg=0, invalid=1530 0236: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 0237: dt=0.000000, rms=0.615 (-0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0238: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0239: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0240: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0241: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0242: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 setting smoothness coefficient to 0.125 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0243: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 0244: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.615, neg=0, invalid=1530 0245: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 0246: dt=0.000000, rms=0.615 (0.000%), neg=0, invalid=1530 writing transformed output volume to CVS/nlalign-afteraseg-norm.mgz... writing warp vector field to CVS/nlalign-afteraseg-norm.m3z GCAMwrite registration took 454 minutes and 1 seconds. createMorph --out CVS/combined_toSynthF_elreg_afteraseg-norm.tm3d --template /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz --subject /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz --in gcam CVS/nlalign-afteraseg-norm.m3z morph CVS/combined_toSynthF_elreg_aseg.tm3d setting orig areas to linear transform determinant scaled 1.00 atlas geometry = 256 , 256 , 256 image geometry = 256 , 256 , 256 vox 2 ras atlas = -1.00000 0.00000 0.00000 127.00000; 0.00000 0.00000 1.00000 -145.00000; 0.00000 -1.00000 0.00000 147.00000; 0.00000 0.00000 0.00000 1.00000; ras 2 vox image = -1.00000 -0.00000 -0.00000 127.00000; -0.00000 -0.00000 -1.00000 147.00000; -0.00000 1.00000 -0.00000 145.00000; -0.00000 -0.00000 -0.00000 1.00000; product = 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; transform at origin 0.00000; 0.00000; 0.00000; 1.00000; invalid voxel count = 0 extension = tm3d data size = 106320095 uilen = 6 loading transform id string = data size = 16 uilen = 3 loading transform id string = data size = 22263622 uilen = 6 loading transform id string = data size = 21956463 uilen = 6 loading transform id string = data size = 21623865 uilen = 6 loading transform id string = data size = 21352955 uilen = 6 loading transform id string = data size = 21100003 uilen = 6 loading transform id string = data size = 20819807 uilen = 6 loading transform id string = data size = 20578694 uilen = 6 loading transform id string = data size = 20343570 uilen = 6 loading transform id string = data size = 20090722 uilen = 6 loading transform id string = data size = 19864509 uilen = 6 loading transform id string = data size = 19617775 uilen = 6 loading transform id string = data size = 19412752 uilen = 6 loading transform id string = data size = 19216332 uilen = 6 loading transform id string = data size = 19079492 uilen = 6 loading transform id string = data size = 18934698 uilen = 6 loading transform id string = data size = 19185423 uilen = 6 loading transform id string = data size = 20406705 uilen = 6 loading transform id string = data size = 19670111 uilen = 6 loading transform id string = data size = 71 uilen = 7 loading transform id string = saveTransform code writing transform size = 117665186 saveTransform code writing transform size = 106320095 saveTransform code writing transform size = 16 saveTransform code writing transform size = 22263622 saveTransform code writing transform size = 21956463 saveTransform code writing transform size = 21623865 saveTransform code writing transform size = 21352955 saveTransform code writing transform size = 21100003 saveTransform code writing transform size = 20819807 saveTransform code writing transform size = 20578694 saveTransform code writing transform size = 20343570 saveTransform code writing transform size = 20090722 saveTransform code writing transform size = 19864509 saveTransform code writing transform size = 19617775 saveTransform code writing transform size = 19412752 saveTransform code writing transform size = 19216332 saveTransform code writing transform size = 19079492 saveTransform code writing transform size = 18934698 saveTransform code writing transform size = 19185423 saveTransform code writing transform size = 20406705 saveTransform code writing transform size = 19670111 saveTransform code writing transform size = 71 writing morph to file CVS/combined_toSynthF_elreg_afteraseg-norm.tm3d exportGcam --fixed /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz --moving /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz --morph CVS/combined_toSynthF_elreg_afteraseg-norm.tm3d --out_gcam CVS/combined_toSynthF_elreg_afteraseg-norm.m3z using bounding box no extension = tm3d data size = 117665186 uilen = 6 loading transform id string = data size = 106320095 uilen = 6 loading transform id string = data size = 16 uilen = 3 loading transform id string = data size = 22263622 uilen = 6 loading transform id string = data size = 21956463 uilen = 6 loading transform id string = data size = 21623865 uilen = 6 loading transform id string = data size = 21352955 uilen = 6 loading transform id string = data size = 21100003 uilen = 6 loading transform id string = data size = 20819807 uilen = 6 loading transform id string = data size = 20578694 uilen = 6 loading transform id string = data size = 20343570 uilen = 6 loading transform id string = data size = 20090722 uilen = 6 loading transform id string = data size = 19864509 uilen = 6 loading transform id string = data size = 19617775 uilen = 6 loading transform id string = data size = 19412752 uilen = 6 loading transform id string = data size = 19216332 uilen = 6 loading transform id string = data size = 19079492 uilen = 6 loading transform id string = data size = 18934698 uilen = 6 loading transform id string = data size = 19185423 uilen = 6 loading transform id string = data size = 20406705 uilen = 6 loading transform id string = data size = 19670111 uilen = 6 loading transform id string = data size = 71 uilen = 7 loading transform id string = exportGcam: padding is = 1 VolumeMorph::exportGcam -> no mriCache - this will take some time z = 0 z = 10 z = 20 z = 30 z = 40 z = 50 z = 60 z = 70 z = 80 z = 90 z = 100 z = 110 z = 120 z = 130 z = 140 z = 150 z = 160 z = 170 z = 180 z = 190 z = 200 z = 210 z = 220 z = 230 z = 240 z = 250 Invalid voxels = 5661710 Valid = 10780556 Not using bounding box box = 0 , 0 , 0 256 , 256 , 256 gcam export invalid voxels = 5996660 GCAMwrite trimming scaling estimates to be in [-1.4604 3.8110] renormalizing gcam intensities by 1.0854 renormalizing gcam intensities using histo estimate 1.0050 skipping tmpout2.mgz - using bounding box Export performed in 3.09375 minutes rm -f CVS/combined_toSynthF_elreg_aseg.tm3d CVS/combined_toSynthF_elreg_afteraseg-norm.tm3d mri_vol2vol --targ /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz --m3z CVS/combined_toSynthF_elreg_afteraseg-norm.m3z --noDefM3zPath --mov /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz --o CVS/final_CVSmorphed_toSynthF_norm.mgz --no-save-reg Using the m3z file as it is; no assumed location. movvol /usr/local/freesurfer/subjects/SynthN/mri//norm.mgz targvol /usr/local/freesurfer/subjects/SynthF/mri//norm.mgz outvol CVS/final_CVSmorphed_toSynthF_norm.mgz invert 0 tal 0 talres 2 regheader 0 noresample 0 interp trilinear (1) precision float (3) Gdiag_no -1 Morphing InvertMorph 0 Synth 0 SynthSeed 1482411145 Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Reading gcam setting orig areas to linear transform determinant scaled 1.00 Applying reg to gcam Applying morph to input Output registration matrix is identity mri_vol2vol done mri_vol2vol --targ /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz --m3z CVS/combined_toSynthF_elreg_afteraseg-norm.m3z --noDefM3zPath --mov /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz --o CVS/final_CVSmorphed_toSynthF_aseg.mgz --interp nearest --no-save-reg Using the m3z file as it is; no assumed location. movvol /usr/local/freesurfer/subjects/SynthN/mri//aseg.mgz targvol /usr/local/freesurfer/subjects/SynthF/mri//aseg.mgz outvol CVS/final_CVSmorphed_toSynthF_aseg.mgz invert 0 tal 0 talres 2 regheader 0 noresample 0 interp nearest (0) precision float (3) Gdiag_no -1 Morphing InvertMorph 0 Synth 0 SynthSeed 1482474812 Final tkRAS-to-tkRAS Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Vox2Vox Matrix is: 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Reading gcam setting orig areas to linear transform determinant scaled 1.00 Applying reg to gcam Applying morph to input Output registration matrix is identity mri_vol2vol done mri_cvs_register: Step 3 (volumetric registration) took 39193 seconds mv CVS/combined_toSynthF_elreg_afteraseg-norm.m3z CVS/final_CVSmorph_toSynthF.m3z rm -f CVS/nlalign-afteraseg-norm.m3z CVS/nlalign-aseg.m3z CVS/combined_toSynthF_elreg_aseg.m3z rm -f CVS/el_reg_toSynthF.tm3d Finished with the cvs-registration pipeline. Started at Wed 14 Dec 20:40:38 GMT 2016 Ended at Thu 15 Dec 09:14:49 GMT 2016 mri_cvs_register Done